Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 773 a.a., DNA topoisomerase I, bacterial from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  457 bits (1177), Expect = e-133
 Identities = 279/659 (42%), Positives = 387/659 (58%), Gaps = 90/659 (13%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           M K+LVIVESPAKAKTI  YLG  Y V SS GH+RDLP    A                 
Sbjct: 1   MPKNLVIVESPAKAKTIEGYLGKDYKVTSSYGHVRDLPKGDKA----------------- 43

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
                             +D  + +K  YE+   K++VI++L+++ KD+DTIYLA+D DR
Sbjct: 44  ------------------IDIKNHFKPTYEVTSDKKEVIKQLKKMVKDSDTIYLASDDDR 85

Query: 121 EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           EGEAI+WHL+E +  D+ + KR+VF EITK AI +A   P  +DID VNAQQARR LDR+
Sbjct: 86  EGEAISWHLKEVLKLDNDKTKRIVFREITKNAITKAIENPRSIDIDLVNAQQARRILDRL 145

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VG+ +SP+LW K+  GLSAGRVQSVAV+ +VEREREI  F  +  +++ A      N K 
Sbjct: 146 VGFELSPVLWKKVKAGLSAGRVQSVAVRFIVEREREIDKFESKSSYKVTAIF----NVKG 201

Query: 241 RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS 300
           + E+  E  + F+   EA+A   L+    + +S+   E +P    P+APF TSTLQQ AS
Sbjct: 202 K-ELNAELPKKFETQEEAEAF--LKNCLEADFSIKNLEKKPAKKTPAAPFTTSTLQQEAS 258

Query: 301 NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV 360
            +L F V +TM +AQRLYEAG ITYMRTDS NLS +A++ A++ I   FG +Y       
Sbjct: 259 RKLSFSVAQTMTLAQRLYEAGKITYMRTDSVNLSQEAMESAQNQIISAFGPEY--HKSRK 316

Query: 361 YGSK-EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSV 419
           Y SK EGAQEAHEAIRP+  N    ++SG ER+ +RLYELIW++ +A QM  A    T V
Sbjct: 317 YTSKSEGAQEAHEAIRPT--NFANEEISG-ERNEQRLYELIWKRAIASQMADALLEKTLV 373

Query: 420 T--VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD-------VLPEMVQGEALKLIQI 470
           T  ++  D  L A G ++KF+G+ +V  + +   E++       +LP +  G+ L LI++
Sbjct: 374 TIGISNSDLTLSASGEVIKFEGFLKVYLESTDDEEEEENNDNKGLLPPLTIGQDLDLIEM 433

Query: 471 DPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNR----RFYSE 526
              Q FT+PPAR+TEASLVK++E+ GIGRPSTYA  ISTIQ R YV   +R    R Y+E
Sbjct: 434 KSRQSFTRPPARYTEASLVKKLEEMGIGRPSTYAPTISTIQKRNYVIKESRDGKPRNYTE 493

Query: 527 ---------------------------KMGDIVTERLSESFSNLMDYGFTADMEENLDDV 559
                                       +  +V + L + F N++DY FTA +E+  DD+
Sbjct: 494 MIIKDGSFSKAEKTENYGSDKNKLFPTNIAMVVNDFLVDHFPNVIDYKFTAKVEKEFDDI 553

Query: 560 AQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTG 618
           A G + W N+++ FYG F   ++ AE+ E    ++   +   P  + G+P++ R    G
Sbjct: 554 AHGIQQWDNMIENFYGKFHNTVEEAETVERANVSSSRELGKDP--KTGKPVIARLGKFG 610