Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 699 a.a., type IA DNA topoisomerase from Bacteroides stercoris CC31F

 Score =  152 bits (385), Expect = 5e-41
 Identities = 135/502 (26%), Positives = 220/502 (43%), Gaps = 37/502 (7%)

Query: 89  YEILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEI 148
           Y+  PG  + +E LR L    ++I +ATD  REGE I  ++   +G     + R+  + +
Sbjct: 82  YKDDPGVVRQLEVLRELFDRCESIIVATDAGREGELIFRYVYNYLGCTKP-FVRLWISSL 140

Query: 149 TKKAIQEAFS--QPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARGL-SAGRVQSV 205
           T KAI+E     + G L  +   + +AR   D +VG   S  L     +G+ S GRVQ+ 
Sbjct: 141 TDKAIREGLRNLREGSLYDNLYLSAKARSEADWLVGINSSQALSLAAGQGVFSLGRVQTP 200

Query: 206 AVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAFKPLNEAQAMAALE 265
            + ++  R RE + F+P +Y++I   +  AK+      ++R +   F  L  A A    E
Sbjct: 201 TLAMICSRYRENKQFVPRKYFQIK--VSAAKDGIAFSALSRNR---FDDLETATA-GLRE 254

Query: 266 KLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITY 325
                  +V   E R    +P   +  + LQ+ A+ +L F   KT+ +AQ LYE   ++Y
Sbjct: 255 VEDGGMLAVSSVERREAVQEPPLLYDLTALQKEANGKLDFSADKTLTLAQSLYEKKVLSY 314

Query: 326 MRTDSTNLSADALDMARSYIEREFGKQYLPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTK 385
            RT S  +S D  +   S I      Q  P    +  +       H  +  + V  H   
Sbjct: 315 PRTGSRYISEDVFEEIPSRITL---LQQYPRFAAIASALRDTPLNHRPVDDAKVTDHHAL 371

Query: 386 L------SGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDG 439
           L       G+ +D   +YE++  + L    P      T V ++AG      KG ++K  G
Sbjct: 372 LVTENLPEGLSQDERAIYEMVAARLLEAFSPHCVKEMTEVALSAGGEIFTLKGAVVKSAG 431

Query: 440 YTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEME------ 493
           +  V  +  +  E+  LPE+   E L L+  +  +  TKP    TE+SL+  ME      
Sbjct: 432 WRAVRGEPEEEVEETTLPELQTDETLPLLASETVEKQTKPKPLHTESSLLSAMEHCGREI 491

Query: 494 ----------KRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNL 543
                     + GIG P+T AA+I T+  R Y+    +     + G  V + + +    +
Sbjct: 492 GDGQLRTAIREAGIGTPATRAAVIETLFARNYIRRDKKNLVPTEKGQAVYDTVKD--KKI 549

Query: 544 MDYGFTADMEENLDDVAQGERD 565
            D   TA  E+ L  +  GE D
Sbjct: 550 ADVEMTAAWEDTLAKIETGEAD 571