Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 717 a.a., DNA topoisomerase 3 from Bacteroides stercoris CC31F

 Score =  138 bits (347), Expect = 1e-36
 Identities = 157/638 (24%), Positives = 269/638 (42%), Gaps = 89/638 (13%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIA-WHLREAIGGDDTRYKRVVFNEITKK 151
           P  E+    +  L + AD I    D  +EGE I  W +++A  G     KR+  + +T++
Sbjct: 79  PTYERQFHVIENLMQHADMIINCGDAGQEGELIQRWVMQKA--GARCPVKRLWISSLTEE 136

Query: 152 AIQEAFSQPGELDIDR--VNAQQARRFLDRVVGYMVSPLLWAKIARG---LSAGRVQSVA 206
           AI+E F++  +    +    A  +R   D ++G   + L   K  +    LS GRVQ+  
Sbjct: 137 AIREGFAKLRDASDFQPLYEAGLSRAIGDWLLGMNATRLYTMKYGQNRQVLSIGRVQTPT 196

Query: 207 VKLVVEREREIRAFIPEEYWEI--------HADLGTAKNAKVRFEVAREK----GEAFKP 254
           + L+V R+ EI+ F+P++YWE+         + +    + ++  E  ++K     +A KP
Sbjct: 197 LALIVNRQLEIQNFVPKQYWELKTVYRDTTFSAILRKSDEELVLEAEKQKEGATAKAAKP 256

Query: 255 ---------LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGF 305
                     +  +  A LE++K S +++     +     P   F  ++LQ   + +  F
Sbjct: 257 EDNRGIEPITDRERGEALLEQIKNSLFTITNVTRKNGKEAPPRLFDLTSLQVECNRKFAF 316

Query: 306 GVKKTMMMAQRLYEAGYITYMRTDSTNLSAD-------ALDMARSY--IEREFGKQYLPE 356
              +T+   Q LYE    TY R D+T LS D        L   R Y  +        LP+
Sbjct: 317 SADETLKTIQSLYEKKVTTYPRVDTTFLSDDIYPKCPGILKGLRDYQVLTAPLDGATLPK 376

Query: 357 APLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLS 416
           +  V+ + +     H AI P+     P  L+ MER   R+++LI R+F+A   P   + +
Sbjct: 377 SKKVFDNSKVTD--HHAIIPT--GQPPQNLTDMER---RVFDLIARRFIAVFYPDCLFAT 429

Query: 417 TSVTVAAGDFELRAKGRILKFDGYTRVL---------PQQSKPGEDD-VLPEMVQGEALK 466
           T+V       E +  G+ +   G+  V           ++ K GE++ VLP  V GE+  
Sbjct: 430 TTVIGEVEQIEFKVSGKQILEPGWRVVFGTPSAQSQEEKEEKGGEEENVLPAFVVGESGP 489

Query: 467 LIQIDPSQHFTKPPARFTEASLVKEME----------------KRGIGRPSTYAAIISTI 510
            +  D  + +T+PP  +TEA+L++ ME                + GIGRPST AAII T+
Sbjct: 490 HLP-DLYEKWTQPPRPYTEATLLRAMETAGKLVDNDELRDALKENGIGRPSTRAAIIETL 548

Query: 511 QDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVL 570
             R Y+    +   +   G  + + + E    L     T   E+ L ++ +   +    L
Sbjct: 549 FKRNYIRKEKKNLIATPTGVELIQIIHEEL--LKSAELTGIWEKKLREIEKRTYNAGQFL 606

Query: 571 DEFYGDFSKKLQTAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPP 630
           +E     S+ + +  S      +N+      P  E G+      AS             P
Sbjct: 607 EELKQMVSEIVMSVLSD----NSNRHITIQAPVPEKGKGEKAAAASD-----------KP 651

Query: 631 KERCKATVNLVPGDEIAADDEGESESRVLLGKHRCPIC 668
           K+  K         +      GE++    L    CP+C
Sbjct: 652 KKEPKKRAPRKSATKKTEQAAGENQPADALVGQPCPLC 689