Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 713 a.a., DNA topoisomerase 3 from Phocaeicola dorei CL03T12C01

 Score =  140 bits (352), Expect = 3e-37
 Identities = 149/602 (24%), Positives = 260/602 (43%), Gaps = 90/602 (14%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIA-WHLREAIGGDDTRYKRVVFNEITKK 151
           PG EK    +  L ++AD I    D  +EGE I  W +++A  G     KR+  + +T++
Sbjct: 79  PGIEKQFRIIEGLMQNADEIINCGDAGQEGELIQRWVMQKA--GAHCPVKRLWISSLTEE 136

Query: 152 AIQEAFSQPGELDIDR--VNAQQARRFLDRVVGYMVSPLLWAKIARG---LSAGRVQSVA 206
           AI+E F++  +    +    A  +R   D V+G   + L   K  +    LS GRVQ+  
Sbjct: 137 AIREGFNKLKDQKEFQPLYEAGLSRAIGDWVLGMNATRLYTLKYGQNRQILSIGRVQTPT 196

Query: 207 VKLVVEREREIRAFIPEEYW--------------------EIHADLGTAKNAKVRFEVAR 246
           + L+V+R++EI  F P++YW                    E+  +   AK    + + A 
Sbjct: 197 LALIVKRQQEIENFTPQQYWVLATLYRETTFSAIIRKSDEELAQEESDAKENPKKAKKAE 256

Query: 247 EKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFG 306
           E       ++ A   A +E++K   ++V +   +  +  P   F  ++LQ   + +  + 
Sbjct: 257 ENRGIPPIIDLATGQALMERVKNVPFTVTEVAKKQGTEAPPRLFDLTSLQVECNKKFAYS 316

Query: 307 VKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYI---------EREFGKQYLPEA 357
             +T+ + Q LYE    TY R D+T LS D      + +               Q L ++
Sbjct: 317 ADETLKLIQSLYEKKVTTYPRVDTTFLSDDIYPKCPNILAGLTPYTAFTAPLAGQKLIKS 376

Query: 358 PLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLST 417
             V+ + +     H AI P+     P  L+ ME+   R+++L+ R+F+A   P  ++ +T
Sbjct: 377 KKVFDNSKVTD--HHAIIPT--GQPPVNLTEMEK---RVFDLVARRFIAVFYPDCKFATT 429

Query: 418 SVTVAAGDFELRAKGRILKFDGYTRVL--PQQSKP-------------GEDDVLPEMVQG 462
           +V   A   E +A G+ +   G+  +   PQ + P              E+  LP  V+G
Sbjct: 430 TVIGEADSIEFKATGKQILDPGWRVIFAKPQTNLPEGMTDPDAEARESDEEHSLPAFVKG 489

Query: 463 EA-LKLIQIDPSQHFTKPPARFTEASLVKEME----------------KRGIGRPSTYAA 505
           E+   L ++D  + +T+PP  +TEA+L++ ME                + GIGRPST AA
Sbjct: 490 ESGPHLPKLD--EKWTQPPRPYTEATLLRAMETAGKLVDNDELRDALKENGIGRPSTRAA 547

Query: 506 IISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERD 565
           II T+  R Y+    +   +   G  +   + E    L     T   E+ L ++ +   D
Sbjct: 548 IIETLFKRHYIRKERKNLIATPTGIELVGLIREEL--LKSAELTGIWEKKLREIEKKSYD 605

Query: 566 WKNVLDEFYGDFSKKLQTAES----------SEDGMRANQPTMTNIPCKECGRPMMIRTA 615
               L+E     S+ + +  S           E   +A  P+    P K+ G P    ++
Sbjct: 606 ATTFLNELKQMVSEIVHSVLSDNTNRRVTAIEETATKAATPSTAKQPKKKTGTPRKNTSS 665

Query: 616 ST 617
           +T
Sbjct: 666 AT 667