Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 653 a.a., DNA topoisomerase III from Escherichia coli BL21

 Score =  107 bits (268), Expect = 2e-27
 Identities = 125/549 (22%), Positives = 223/549 (40%), Gaps = 76/549 (13%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIG---GDDTRYKRVVFNEIT 149
           P   K +  ++R   +A  I  A D DREG+ +   + + +        + +R + N++ 
Sbjct: 79  PSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLN 138

Query: 150 KKAIQEAFSQPGELD-----------------IDRVNAQQARRFLDRVVGYMVSPLLWAK 192
            +A++ A  +                      +  +N  +A   L R  GY         
Sbjct: 139 PQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGV------ 192

Query: 193 IARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAF 252
               LS GRVQ+  + LVV R+ EI  F+ ++++E+ A + T   A  RF    +  EA 
Sbjct: 193 ----LSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTP--ADERFTAIWQPSEAC 246

Query: 253 KP--------LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLG 304
           +P        L+   A   + ++      V    D+  S     PF  S LQ  A+ R G
Sbjct: 247 EPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFG 306

Query: 305 FGVKKTMMMAQRLYEA-GYITYMRTDSTNLSADALDMARSYIE--REFGKQYLPEAPLVY 361
              +  + + Q+LYE    ITY R+D   L  +      + +          LP+ P+V 
Sbjct: 307 LSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQ-PVVD 365

Query: 362 GS------KEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL 415
                    +   +AH AI P    T  +    +  +  ++Y LI RQ+L    P A + 
Sbjct: 366 PDIRNRCWDDKKVDAHHAIIP----TARSSAINLTENEAKVYNLIARQYLMQFCPDAVFR 421

Query: 416 STSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD--VLPEMVQGEALKLIQIDPS 473
              + +     +  AK R L   G+  +L  + +  E+D   LP + +G+ L   + +  
Sbjct: 422 KCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVV 481

Query: 474 QHFTKPPARFTEASLV------------KEMEK-----RGIGRPSTYAAIISTIQDRGYV 516
           +  T+PP  FT+A+L+            K+++K      G+G  +T A II  +  RG++
Sbjct: 482 ERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFL 541

Query: 517 TLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGD 576
           T   R  +S   G  +   L E  +       TA  E  L  +++ +  +++ +    G 
Sbjct: 542 TKKGRYIHSTDAGKALFHSLPEMATR---PDMTAHWESVLTQISEKQCRYQDFMQPLVGT 598

Query: 577 FSKKLQTAE 585
             + +  A+
Sbjct: 599 LYQLIDQAK 607