Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 865 a.a., DNA topoisomerase I, omega subunit from Escherichia coli BL21

 Score = 1176 bits (3041), Expect = 0.0
 Identities = 579/872 (66%), Positives = 692/872 (79%), Gaps = 10/872 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           MGK+LVIVESPAKAKTINKYLG+ YVVKSS+GHIRDLPTSGSA      A K   +    
Sbjct: 1   MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSA------AKKSADSTSTK 54

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
            A  PK+  R  LV RMGVDP H W+A YE+LPGKEKV+ EL++LA+ AD IYLATDLDR
Sbjct: 55  TAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDR 114

Query: 121 EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           EGEAIAWHLRE IGGDD RY RVVFNEITK AI++AF++PGEL+IDRVNAQQARRF+DRV
Sbjct: 115 EGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRV 174

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VGYMVSPLLW KIARGLSAGRVQSVAV+LVVEREREI+AF+PEE+WE+ A   T     +
Sbjct: 175 VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEAL 234

Query: 241 RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS 300
             +V  +  + F+P+N+ Q  AA+  L+ + YSV++RED+PT+SKP APFITSTLQQAAS
Sbjct: 235 ALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAAS 294

Query: 301 NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV 360
            RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLS DA++M R YI   FGK+YLPE+P  
Sbjct: 295 TRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQ 354

Query: 361 YGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT 420
           Y SKE +QEAHEAIRPSDVN     L  ME DA++LY+LIWRQF+ACQM PA+Y ST++T
Sbjct: 355 YASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLT 414

Query: 421 VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPP 480
           V AGDF L+A+GRIL+FDG+T+V+P   K  ED +LP + +G+AL L+++ P+QHFTKPP
Sbjct: 415 VGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPP 474

Query: 481 ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF 540
           ARF+EASLVKE+EKRGIGRPSTYA+IISTIQDRGYV + NRRFY+EKMG+IVT+RL E+F
Sbjct: 475 ARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF 534

Query: 541 SNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAES--SEDGMRANQPTM 598
             LM+Y FTA ME +LD VA  E +WK VLD F+ DF+++L  AE    E GMR NQ  +
Sbjct: 535 RELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVL 594

Query: 599 TNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGE-SESR 657
           T+I C  CGR M IRTASTGVFLGCSGY+LPPKERCK T+NLVP +E+    EGE +E+ 
Sbjct: 595 TSIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETN 654

Query: 658 VLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKC 717
            L  K RCP C TAMD+YL+D K KLH+CGNNP C GYEIEEG +RIKGY+GP +EC+KC
Sbjct: 655 ALRAKRRCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKC 714

Query: 718 GSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRD 777
           GSEM LK GRFGK+  CTN  CKNTRK+L++GE APPK D V +PEL CEK D  +VLRD
Sbjct: 715 GSEMHLKMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRD 774

Query: 778 GASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRK 837
           GA+G+FLAA+ FPK+RETRAPLV E+   +  +  K  +L DAPQ+DP+G   ++R+SRK
Sbjct: 775 GAAGVFLAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRK 834

Query: 838 TKEQYVQSEVDGKPTGWKAFYDGNAWKVEDKR 869
           TK+QYV SE DGK TGW AFY    W VE K+
Sbjct: 835 TKQQYVSSEKDGKATGWSAFYVDGKW-VEGKK 865