Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 180 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 32/158 (20%)

Query: 603 CKECGRPMMIRTASTGVFLGCSGY---SLPPKERCKATVNLVPGDEIAADDEGESESRVL 659
           C ECG+P+ I+ + +G F+GC+GY   S       K T  L   D +A            
Sbjct: 23  CPECGKPLHIKNSKSGPFIGCTGYPECSFSKPLHDKQTTILKTLDGVA------------ 70

Query: 660 LGKHRCPICATAMDAYLLDEKHKLHI-CGNNPDCVGYEIEEGNYRIKGYEGPSLECDKC- 717
                CP CA+  D  +   +  + I C N P C  + IE     IK  E   ++C KC 
Sbjct: 71  -----CPECAS--DLAIKKGRFGMFIGCTNFPSC--HHIEP----IKEKEDTLVDCPKCK 117

Query: 718 GSEMQLKTGRFGK-FFGCTN-PACKNTRKLLKSGEAAP 753
              +  +T ++GK FF C + P C+         E+ P
Sbjct: 118 KGHLISRTNKYGKQFFACNHYPQCRYVLNFTPVNESCP 155



 Score = 41.2 bits (95), Expect = 5e-08
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 713 ECDKCGSEMQLKTGRFGKFFGCTN-PACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDD 771
           +C +CG  + +K  + G F GCT  P C  ++ L          +D V  PE   +    
Sbjct: 22  DCPECGKPLHIKNSKSGPFIGCTGYPECSFSKPLHDKQTTILKTLDGVACPECASD---- 77

Query: 772 TYVLRDGASGLFLAASQFP 790
              ++ G  G+F+  + FP
Sbjct: 78  -LAIKKGRFGMFIGCTNFP 95



 Score = 29.6 bits (65), Expect = 1e-04
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 597 TMTNIPCKECGRPMMIRTASTGVFLGCSGY 626
           T+  + C EC   + I+    G+F+GC+ +
Sbjct: 65  TLDGVACPECASDLAIKKGRFGMFIGCTNF 94