Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score =  430 bits (1106), Expect = e-124
 Identities = 271/708 (38%), Positives = 388/708 (54%), Gaps = 102/708 (14%)

Query: 4   SLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPAL 63
           ++V+VESPAKAKTINKYLG+ Y V +S GH+RDLP            AK G         
Sbjct: 2   NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLP------------AKDGS-------- 41

Query: 64  SPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGE 123
                          V PD  ++  +E+     K ++++    K +D ++LATD DREGE
Sbjct: 42  ---------------VLPDQDFEMSWEVDSASAKRMKDIADAVKSSDGLFLATDPDREGE 86

Query: 124 AIAWHLREAIGGD----DTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR 179
           AI+WH+ + +       D   KRVVFN ITKKA+ +A + P ++D+  V+A  ARR LD 
Sbjct: 87  AISWHVLDLLKKKRVLGDKPVKRVVFNAITKKAVLDAMANPRDIDVPLVDAYLARRALDY 146

Query: 180 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAK 239
           +VG+ +SP+LW K+    SAGRVQSVA++LV +RE EI  F+ EEYW I A L T +  +
Sbjct: 147 LVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDRESEIERFVSEEYWNISALLKTPRGDE 206

Query: 240 VRFEVAREKGE-----AFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITST 294
              ++    G+       K   +A  + AL  L+ ++Y V   E +P    P  PF TST
Sbjct: 207 FEAKLVSADGKRLQSRGIKTGEDANRLKAL--LEGATYVVDTVEAKPVKRNPGPPFTTST 264

Query: 295 LQQAASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADALDMARSYIE 346
           LQQAAS+R+GFG  +TM +AQ+LYE         G ITYMRTD   ++ +A+D AR  I 
Sbjct: 265 LQQAASSRMGFGASRTMQVAQKLYEGIDIGGETVGLITYMRTDGVQIAPEAIDAARLAIG 324

Query: 347 REFGKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSG-MERDAERLYELIWRQF 404
            +FG++Y+PE    Y +K + AQEAHEAIRP+D    P ++   ++ D  RLY+LIW++ 
Sbjct: 325 EQFGERYVPEKARFYSTKAKNAQEAHEAIRPTDFTRTPDQVKRYLDADQLRLYDLIWKRG 384

Query: 405 LACQMPPAQYLSTSVTVAAGD----FELRAKGRILKFDGYTRVLPQQSKPGE-----DDV 455
           +A QM  A+   T+V + A        LRA G +++FDG+      Q + GE     DD 
Sbjct: 385 IASQMASAEIERTTVEILADKNGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDDE 444

Query: 456 --LPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDR 513
             LP++   E L   +I+ SQHFT+PP R++EASL+K+ME+ GIGRPSTYAA + T+ DR
Sbjct: 445 GRLPQINARENLAKQKINASQHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDR 504

Query: 514 GYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEF 573
            Y+ +  R+      G +VT  L   F+  ++Y FTA +EE LD ++ GE DWK VL +F
Sbjct: 505 EYIVIDKRKLIPHSRGRLVTAFLESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDF 564

Query: 574 YGDFSKKLQTAE---------------------SSEDGMRANQPTMTNIPCKECGR-PMM 611
           + DF  +++  +                       EDG   + P +    C+ CG   + 
Sbjct: 565 WKDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKREDG---SDPRI----CQVCGTGNLS 617

Query: 612 IRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL 659
           ++    G F+GCS Y       C  T  L   D   AD    +E + L
Sbjct: 618 LKLGKYGAFVGCSNY-----PECNYTRQLT-SDGAEADAAASNEPKAL 659



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKLLKSGEAA 752
           C  CG+  + LK G++G F GC+N P C  TR+L   G  A
Sbjct: 608 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEA 648