Pairwise Alignments

Query, 555 a.a., Methyl-accepting chemotaxis protein CtpH from Pseudomonas putida KT2440

Subject, 639 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  261 bits (667), Expect = 6e-74
 Identities = 155/463 (33%), Positives = 256/463 (55%), Gaps = 18/463 (3%)

Query: 103 QFQAREQQVQQLLGQLIDNSDARLKASLQQLRDSHRQLGQAYAQGRQAFLAAGGDPVAGD 162
           QFQ    +V+   G +   ++AR  A +++     + L   +   +Q+ L A    +   
Sbjct: 177 QFQLARYEVRGYTGNVSPETEARAAAQIEKAIAGLKDLNATFGASQQSALTALETALGAY 236

Query: 163 RAVKGVDRAASEQMSELVEQLRADARQRAASINASAERTVWLGL--------------LV 208
           R+     +AA+      +   RA+   + A I   +++   + L              L+
Sbjct: 237 RSAVQNYKAANAN----IVTARAEMTTQGADIVTISDKLYEIQLTRRDAESAQARSLQLI 292

Query: 209 MLASAVLVGLLSLWLVNRSLIEPIRQLIEYVAQLSQGSFAARVDSRREDELGRLARAANT 268
               A+LVG+++  ++ R +  PI++ +  V +++ G  +  +   R DELG L +    
Sbjct: 293 STLLALLVGVIAALVITRQITRPIQETLAVVERIASGDLSHNIQVTRRDELGVLQQGIQR 352

Query: 269 LRDFLADTVGRLQDNAQELEGASGQLRSIAGDMARGTHDQFQRTDQVATAMHEMSATAQE 328
           +   L + +  ++D   ++  A+ +L ++    + G + Q   TDQVATAMHEM+AT QE
Sbjct: 353 MGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETDQVATAMHEMTATVQE 412

Query: 329 VARHAAEAARAADDADHSAQAGEQVMQQTIDIIGLVNREIAGTATVIRDLEHDSTRIGKV 388
           VAR+A +A+ AA DAD  A+AG++V+ + I  I  +  E+A +   +  L+ +S +IG V
Sbjct: 413 VARNAEQASLAAADADGQARAGDKVVAEAIAQIERLAAEVARSTDAMTHLQQESNKIGSV 472

Query: 389 LEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAASIAEIHQIIEAV 448
           ++VI+ +AEQTNLLALNAAIEAARAGEAGRGFAVVADEVR LAQRT  S  EI  ++  +
Sbjct: 473 MDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGL 532

Query: 449 QSGAVEAVKAIESGQQRSQEGAEQVEQAGQMLQRITQAVEAIRDMNRQIATAAEEQTSVA 508
           Q+G  +    + + +  +    E   +AG  L+ IT+ V  I+ MN+QIA AAE+Q++VA
Sbjct: 533 QNGTQQVANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVA 592

Query: 509 EDISRNLIEITRIATANQEAVQHTEQAGQRLHGLSGQLGEVTS 551
           E+ISR+++ +  ++     A   T ++   L  L  QL ++ S
Sbjct: 593 EEISRSIVNVRDVSEQTATASDETAKSSVELARLGSQLQQMVS 635



 Score = 42.4 bits (98), Expect = 6e-08
 Identities = 58/290 (20%), Positives = 109/290 (37%), Gaps = 47/290 (16%)

Query: 283 NAQELEGASGQLRSIAGDMARGTHDQFQRTDQVATAMHEMSATAQEVARHAAEAARAADD 342
           +A+  +  S QL S    +  G       T Q+   + E  A  + +A         + D
Sbjct: 280 DAESAQARSLQLISTLLALLVGVIAALVITRQITRPIQETLAVVERIA---------SGD 330

Query: 343 ADHSAQAGEQ----VMQQTIDIIGLVNREIAGTATVIRDLEHDSTRIGKVLEVIRGIAEQ 398
             H+ Q   +    V+QQ I  +G   RE+      I  +    T+I    E +  + EQ
Sbjct: 331 LSHNIQVTRRDELGVLQQGIQRMGTTLREL------ISGIRDGVTQIASAAEELSAVTEQ 384

Query: 399 TNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAASIAEIHQIIEAVQSGAVEAVKA 458
           T+    +  IE               D+V +      A++ E+ +  E     A +A   
Sbjct: 385 TSAGVNSQKIET--------------DQVATAMHEMTATVQEVARNAEQASLAAADADGQ 430

Query: 459 IESGQQRSQEGAEQVEQAGQMLQRITQAVEAIRDMNRQIATAAEEQTSVAEDIS----RN 514
             +G +   E   Q+E+    + R T A+  ++  + +I +  +   +VAE  +      
Sbjct: 431 ARAGDKVVAEAIAQIERLAAEVARSTDAMTHLQQESNKIGSVMDVIKAVAEQTNLLALNA 490

Query: 515 LIEITR----------IATANQEAVQHTEQAGQRLHGLSGQLGEVTSRLS 554
            IE  R          +A   +   Q T+++ + + GL   L   T +++
Sbjct: 491 AIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGLQNGTQQVA 540