Pairwise Alignments

Query, 555 a.a., Methyl-accepting chemotaxis protein CtpH from Pseudomonas putida KT2440

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  219 bits (557), Expect = 3e-61
 Identities = 139/344 (40%), Positives = 205/344 (59%), Gaps = 7/344 (2%)

Query: 204 LGLLVMLASAVLVGLL-SLWLVNRSLIEPIRQLIEYVAQLSQGSFAARVDSRREDELGRL 262
           + + V +A AV VG+L S W    +L     +L+  V   +  +  A++ S       RL
Sbjct: 174 VAIAVAVAVAVPVGVLCSRWRQGSTL-----RLLHGVEPSTSDALIAQMYSDARGPQARL 228

Query: 263 ARAANTLRDFLADTVGRLQDNAQELEGASGQLRSIAGDMARGTHDQFQRTDQVATAMHEM 322
             A  +    L   + RLQD+A++L   +GQ   +A   ++G   Q   T+QV+ A+++M
Sbjct: 229 ETAFLSQNARLKTCLTRLQDSAEQLSALAGQSDQLASASSKGLDRQRVETEQVSAAVNQM 288

Query: 323 SATAQEVARHAAEAARAADDADHSAQAGEQVMQQTIDIIGLVNREIAGTATVIRDLEHDS 382
           +AT QEVA H    A A   A+     G +V + T + I  ++  ++ T   +  L  DS
Sbjct: 289 AATTQEVASHVQRTADATQQANVLTGRGREVARDTREAIERLSAVVSETGVTVAQLAKDS 348

Query: 383 TRIGKVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAASIAEIH 442
             IG V++VI+GIA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LAQRT+ S  +IH
Sbjct: 349 NEIGSVVDVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQSTTQIH 408

Query: 443 QIIEAVQSGAVEAVKAIESGQQRSQEGAEQVEQAGQMLQRITQAVEAIRDMNRQIATAAE 502
            +I  +Q+ +  AV+++E+GQ+++QEG   V +A Q L  I++AV  I DM  QIA A E
Sbjct: 409 GLITQLQASSNNAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHITDMTTQIAAATE 468

Query: 503 EQTSVAEDISRNLIEITRIA-TANQEAVQHTEQAGQRLHGLSGQ 545
           EQ++VAE+ISRN+  I  +A   + +A Q T+ + +  +  S Q
Sbjct: 469 EQSAVAEEISRNITTIAELADQTSLQAHQSTDLSKELTNTASTQ 512



 Score = 52.0 bits (123), Expect = 6e-11
 Identities = 72/321 (22%), Positives = 125/321 (38%), Gaps = 55/321 (17%)

Query: 88  LLRGRQPAEMDKYWQQFQAREQQVQQLLGQLIDNSDARLKASLQQLRDSHRQLGQAYAQG 147
           LL G +P+  D    Q  +  +  Q  L     + +ARLK  L +L+DS  QL     Q 
Sbjct: 201 LLHGVEPSTSDALIAQMYSDARGPQARLETAFLSQNARLKTCLTRLQDSAEQLSALAGQS 260

Query: 148 RQAFLAAGGDPVAGDRAVKGVD--RAASEQMSELVEQLRADARQRAASINASAERTVWLG 205
            Q   A+           KG+D  R  +EQ+S  V Q+ A  ++ A+ +  +A+ T    
Sbjct: 261 DQLASASS----------KGLDRQRVETEQVSAAVNQMAATTQEVASHVQRTADAT---- 306

Query: 206 LLVMLASAVLVGLLSLWLVNRSLIEPIRQLIEYV-AQLSQGSFAARVDSRREDELGRLAR 264
                 + VL G        R +    R+ IE + A +S+        ++  +E+G +  
Sbjct: 307 ----QQANVLTGR------GREVARDTREAIERLSAVVSETGVTVAQLAKDSNEIGSVVD 356

Query: 265 AANTLRDFLADTVGRLQDNAQELEGASGQLRSIAGDMARG-------THDQFQRTDQVAT 317
               + D         Q N   L  A    R  AG+  RG            QRT Q  T
Sbjct: 357 VIKGIAD---------QTNLLALNAAIEAAR--AGEQGRGFAVVADEVRQLAQRTSQSTT 405

Query: 318 AMHEMSATAQEVARHAAEAARAADDADHSAQAGEQVMQQTIDIIGLVNREIAGTATVIRD 377
            +H +    Q  + +A +          S + G++  Q+ +  +   ++ + G +  +  
Sbjct: 406 QIHGLITQLQASSNNAVQ----------SMENGQRQAQEGVAWVLEADQALVGISEAVSH 455

Query: 378 LEHDSTRIGKVLEVIRGIAEQ 398
           +   +T+I    E    +AE+
Sbjct: 456 ITDMTTQIAAATEEQSAVAEE 476