Pairwise Alignments

Query, 470 a.a., D-alanyl-D-alanine carboxypeptidase from Pseudomonas putida KT2440

Subject, 481 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

 Score =  156 bits (395), Expect = 1e-42
 Identities = 127/446 (28%), Positives = 208/446 (46%), Gaps = 31/446 (6%)

Query: 13  TTLPAKVQQALKANKLQDTALSLVMLPLDGPGTPTVFNADVSVNPASTMKLVTTYAALEL 72
           T+ PA ++Q L    L    +SL++       T    N+   + PAS +KL+TT AA+++
Sbjct: 25  TSTPATLEQLLADPALNGATVSLMVRDARSGSTLYQHNSRTRLIPASNLKLLTTAAAMDV 84

Query: 73  LGPTFQWKTEFYTDGTLSNGVLNGNLYLKGGGDPKLNMEKLWLLMRDLRANGVRTVTGDL 132
           LGP +++ T+  ++GTL    L GNLYLKG GDP         L   L A GVR V GDL
Sbjct: 85  LGPQYRFSTQLLSNGTLQGERLTGNLYLKGLGDPTTQFADYQALAAQLAAQGVRQVQGDL 144

Query: 133 VLDRSHFVQPNL--PQFNDDG----GDENKPFLVKPD------SLLVNLKALRFVARNDG 180
           V D + F    L     +DD     G +     V P+      +LLV  KA   V    G
Sbjct: 145 VFDDTFFDAERLGVDWAHDDESTYYGAQISALTVSPNTDFDAGTLLVTAKAPSGV----G 200

Query: 181 GKVTVAVEPPIARIRIDNQVKPVASKKCTGDVRYNPVPQADGISVTVSGQLGDGCNSQTY 240
             V+V V P    +++ N+              Y    Q     + ++G L  G  S+ +
Sbjct: 201 QPVSVVVSPSTDYVQLSNRAVSGPGN------NYGITRQHGTNLLQLTGTLAPGKQSRQW 254

Query: 241 LSLLDHSTYAAGAVRAIWNELGGNIQGGDRIENV-PKSARLLARAFSPDLVEVIRDINKY 299
           +S+ + +   A        + G  + G   I    P +AR+LA   S  L  ++  + K 
Sbjct: 255 VSVWEPTQLVANLFEQALAQQGIQVLGRRVIGGASPVTARVLAEHQSAPLQALLTPLLKL 314

Query: 300 SNNTMAQQLFLSLGAQFRTDADGDDARAAQRVVRQWLAKKGITAPHLVMENGSGLSRAER 359
           SNN M++    ++G   R  ++   A+A    V  ++ ++G+    L   +GSGLSR   
Sbjct: 315 SNNNMSEAFLKAMG---RKASNAGTAQAGVAAVADFMRRQGLDPMTLSQVDGSGLSRRNL 371

Query: 360 VSTREMAEMLKAAWKSPYAAEFMSSMPLVG-----MDGTMRKRLKRTAMAGEGHIKTGTL 414
           VS++ + ++L A  K P+   + +++P+ G       G++R RL+ T      H KTG++
Sbjct: 372 VSSQNLTDLLLATAKQPWFEAWYNALPIAGNTDRISGGSLRYRLRGTPAENNLHAKTGSM 431

Query: 415 NTVRAIAGFSRDSNGHTWAVAAILND 440
             V +++G+  D+ G     + I N+
Sbjct: 432 AGVSSLSGYITDAQGRRLVFSMISNN 457