Pairwise Alignments

Query, 274 a.a., CmpX protein from Pseudomonas putida KT2440

Subject, 486 a.a., Small-conductance mechanosensitive channel from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 25  IPNLFGALVVVLLGFVVAKLLDTLLSKLLAKFGLDRLMAGTGLTKMLGRGGIQVPISTLI 84
           +PNL  A +++++ ++VA     LL+ LLA  G D L A   L     +       ST +
Sbjct: 291 VPNLIAAALILVVTWLVASFASKLLATLLATLGFDTLPARVNLAHAFEK----TSASTAV 346

Query: 85  GKIVYWFVLLIFLVSAAESLGLERVSATLDMLALYLPKVFGAALVLLAGVLLAQVANGLV 144
           G++V +F +L   V AA  LG  +VS+ +     +   +   + +L+ G  LA +A   +
Sbjct: 347 GRVVLFFAMLFATVEAAAQLGFGQVSSIVASFIRFGGDILLGSAILVIGFWLANLAYDAI 406

Query: 145 RGAAEGIGLEYSAGLGRITQGLVIIISISVAISQLEVKTDLLNHVIVIGLITVGLAVALA 204
              A G G +   GL R+ +  ++ + I++ +  + +  D++N    + L  V +AVAL+
Sbjct: 407 -DRASGPGTK---GLARVGRYAILALVIAMGLRAMGIADDIVNLAFGLTLGAVAVAVALS 462

Query: 205 MGLGSREIAGQIL 217
            GLG RE AG+++
Sbjct: 463 FGLGGREAAGKLM 475



 Score = 60.5 bits (145), Expect = 7e-14
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 21/208 (10%)

Query: 5   LWTQSLVTAMTALWTKVANFIPNLFGALVVVLLGFVVAKLLDTLLSKLLAKFGLDRLMAG 64
           L    L+  + A+ TK  + +PN   A V+  +G++VA +L  L + L    G+D+L + 
Sbjct: 179 LQMDGLLDPLRAMVTKTLDMLPNAVAAFVIGGVGWIVATVLRNLTTHLSRTAGVDKLGSR 238

Query: 65  TGLTKMLGRGGIQVPISTLIGKIVYWFVLLIFLVSAAESLGLERVSA----TLDMLALYL 120
            GL          V +S +IG +V+  V L  L++A ++L +E +S      L+ L   +
Sbjct: 239 AGLAD-------TVQLSRVIGMLVFVAVFLPSLIAALDALKIEAISRPATDMLNTLLQAV 291

Query: 121 PKVFGAALVLLAGVLLAQVANGLVRGAAEGIGLEYSAGLGRITQGLVIIISISVAISQLE 180
           P +  AAL+L+   L+A  A+ L+      +G +           L   ++++ A  +  
Sbjct: 292 PNLIAAALILVVTWLVASFASKLLATLLATLGFD----------TLPARVNLAHAFEKTS 341

Query: 181 VKTDLLNHVIVIGLITVGLAVALAMGLG 208
             T +   V+   ++   +  A  +G G
Sbjct: 342 ASTAVGRVVLFFAMLFATVEAAAQLGFG 369



 Score = 50.4 bits (119), Expect = 7e-11
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 44/229 (19%)

Query: 19  TKVANFIPNLFGALVVVLLGFVVAKLLDTLLSKLLAKFGLDRLMAGTGLTKMLGRGGIQV 78
           T++  + P L G L++ L+ ++VA ++  L  KLL K  LD         + L       
Sbjct: 103 TQLFEYAPRLLGGLLLALVAWLVAGVVRALSQKLLDKTTLD---------EKLSEHADMA 153

Query: 79  PISTLIGKIVYWFVLLIFLVSAAESLGLE--------RVSATLDMLALYLPKVFGAALVL 130
           PIS  +   ++W V+L+F+ +   +L ++         V+ TLDM    LP    A ++ 
Sbjct: 154 PISDSLAGALFWLVILLFVPAILGALQMDGLLDPLRAMVTKTLDM----LPNAVAAFVIG 209

Query: 131 LAGVLLAQVANGLVRGAAEGIGLE---YSAGLGRITQ-----GLVIII-----SISVAIS 177
             G ++A V   L    +   G++     AGL    Q     G+++ +     S+  A+ 
Sbjct: 210 GVGWIVATVLRNLTTHLSRTAGVDKLGSRAGLADTVQLSRVIGMLVFVAVFLPSLIAALD 269

Query: 178 QLEVK------TDLLNHVI--VIGLITVGLAVALAMGLGSREIAGQILA 218
            L+++      TD+LN ++  V  LI   L + +   + S   A ++LA
Sbjct: 270 ALKIEAISRPATDMLNTLLQAVPNLIAAALILVVTWLVAS--FASKLLA 316