Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  546 bits (1408), Expect = e-159
 Identities = 345/1043 (33%), Positives = 579/1043 (55%), Gaps = 43/1043 (4%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            M  +  F+ RP+ A V+S L+++ GL A+  LPI +YP +   ++ +  +YPGA+ +++ 
Sbjct: 1    MNLSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIA 60

Query: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSL---ITLRMVLNRDSTQALAETMAKVNQVRY 117
              V  P+ + ++ VEG+ Y+ S +     L   +T R+  + D  Q L +   +V+Q   
Sbjct: 61   ETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQN--RVSQAEP 118

Query: 118  RLPEKAYDPVVEL--SAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQ 175
            RLPE+     +    SA D T V ++   ++   I  L +Y    V+   + I+GV +VQ
Sbjct: 119  RLPEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQ 178

Query: 176  SFGGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTD-- 233
             FGG   +MR+WLD +++A RG++A+DV  A+R  N QA  G V     L+ + +     
Sbjct: 179  IFGGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSIN 238

Query: 234  ----LTRVEDFRELIIRNDGTD--LVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPT 287
                L   E+F ++I+++ GTD  + RLRDIG +E+ AA     + ++  PAV +G+F  
Sbjct: 239  AQGRLQSEEEFGDIIVKS-GTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQA 297

Query: 288  PSGNPLVIVEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLV 347
            P  N L I   +R+ + ++ + +P G+   +AY+  +F+ ASI  V+ TL+EA+++VVLV
Sbjct: 298  PGSNALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLV 357

Query: 348  IWLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVE 407
            + L L + R+ +I ++A+P+S++G   ++ + GFS+N L+L  +VLAIG+VVDDAIVVVE
Sbjct: 358  VILFLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVE 417

Query: 408  NVHRHIEEGKSPIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLA 467
            NV R+IE G +P  A     RE++GP+IA+ L L AV+ P+  + GLTG  +R+FA+T+A
Sbjct: 418  NVERNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIA 477

Query: 468  GAVIVSGIVALTLSPVMSSLLLQ-PGQQHGAMAAIADRLFGTLSGVYGRVL-----AYTL 521
             + ++S I +LTLSP +++LLL+   Q   A+    DR FG L   + ++      AY+ 
Sbjct: 478  ISTVISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAFGWLFRGFNKLFHRGSEAYSG 537

Query: 522  AHRWISGGVALLVCLSLP------WLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAER 575
              + +    AL++ + +        L+        P +D+  ++   + P  A+L+  + 
Sbjct: 538  GVKNVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDE 597

Query: 576  FALKLDQVMKSIAETTDT-----WIING-TDGPAASFGGINLSAWQARER---SAAQVQA 626
               ++ ++MK      D        ING T+   +      L  +  R+R   S   V  
Sbjct: 598  VIQRMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAG 657

Query: 627  QLQQAVADIEGSSIFAF---QVASLPGSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARD 683
            QL  A A I+ + I  F    VA L G++GG  +Q+  R++  Y ++   ++    +A+ 
Sbjct: 658  QLNGAFAGIQDAFIVMFPPPPVAGL-GTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQ 716

Query: 684  SGLFAVVDSDLDYNNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSY 743
            +   A + +    N P +   +DR KA  LG+ +  I +++ + +G  Y N F  FGR+Y
Sbjct: 717  APELAGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTY 776

Query: 744  DVIPQSIQDQRLTPAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQA 803
             V  Q+    R     +    VR+  G +VPL+ L++++    P R ++++   A+ +  
Sbjct: 777  SVRVQADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADING 836

Query: 804  IPAPGVSMGNAVAFLEQLTAE-LPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVL 862
             PAPG S G A   + ++ AE LP G S +W   + Q +  G +    F  A+++++LVL
Sbjct: 837  GPAPGYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVL 896

Query: 863  AAQYESLVDPLIILVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAF 922
            AAQYESL  P+ I++ VP+ I  A+  + +     N++TQIGL+ L+GL +K+ IL+V F
Sbjct: 897  AAQYESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEF 956

Query: 923  ANEIQVRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIV 982
            A E++        AAI  A+++RLRP+LMT+ A   GVLPL+ ++GAG+  R  +GV + 
Sbjct: 957  ARELEFAGRTPVQAAI-EASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVF 1015

Query: 983  CGMLVGTLFTLFVLPTIYAWLAR 1005
             GM+  T F LF+ P  Y  L R
Sbjct: 1016 AGMIGVTAFGLFLTPVFYVLLRR 1038



 Score = 61.2 bits (147), Expect = 4e-13
 Identities = 56/245 (22%), Positives = 105/245 (42%), Gaps = 7/245 (2%)

Query: 769  DGSLVPLATLVRLDIEVAPNRLLQF-DQQNASTLQAIPAPGVSM----GNAVAFLEQLTA 823
            DG++  L  + RL++  A   L    +   A  +    APG +      N    +E+L  
Sbjct: 259  DGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGSNALDISANVRKTMEELNK 318

Query: 824  ELPPGFSHDWQSESRQYVQEGF-ALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLS 882
             +P G  +    +  Q+V+    +++   L A++++ LV+    ++    +I L+ VP+S
Sbjct: 319  NMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVILFLQTWRASIIPLLAVPVS 378

Query: 883  ICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAA 942
            + G    L +   ++N  +  GLV  IG++    I++V    E  +   L    A  RA 
Sbjct: 379  VIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENV-ERNIEAGLTPREATYRAM 437

Query: 943  QIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAW 1002
            +    P++     +    +PL F SG          V I    ++  + +L + P + A 
Sbjct: 438  REVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSLTLSPALAAL 497

Query: 1003 LARDH 1007
            L R H
Sbjct: 498  LLRGH 502