Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1052 a.a., multidrug efflux RND transporter permease subunit from Magnetospirillum magneticum AMB-1

 Score =  542 bits (1397), Expect = e-158
 Identities = 352/1046 (33%), Positives = 564/1046 (53%), Gaps = 39/1046 (3%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            M  +  F+ RP+ A V+S++I+L GL +M  LPI +YP +   ++ +  ++PGA+ +++ 
Sbjct: 1    MTLSKFFIDRPIFAGVISTVILLAGLISMLLLPISEYPEVVPPSVIVKAQFPGANPKVIA 60

Query: 61   GFVTQPITQAVSSVEGIDYL-SSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRL 119
              V  P+ + ++ VE + Y+ S ++  G   +T+   +  D   A      +VNQ   RL
Sbjct: 61   QTVATPLEEQINGVENMLYMFSQAASDGTMTLTVSFKIGTDPDLATQLVQNRVNQALPRL 120

Query: 120  PE--KAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSF 177
            PE  ++       S+ D T V ++   ++   +  L +Y    V+ Q + I GV  VQ F
Sbjct: 121  PEVTRSLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGVGSVQLF 180

Query: 178  GGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTD---- 233
            G    AMR+WLD E++A R +TA +V  A+R  N Q   G + G    + +++       
Sbjct: 181  GSGDYAMRIWLDPEKVAERSMTADEVVAAIRRQNVQVAAGVIGGPPYGSGVELQLPINAQ 240

Query: 234  --LTRVEDFRELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGN 291
              LT  + F E+II+ D   + RL+D+  VE+ AA     + +D KPAV + +F +P  N
Sbjct: 241  GRLTDADQFAEIIIKRDSGVVTRLKDVARVEIDAAQYGLRSLLDNKPAVAIPVFQSPGSN 300

Query: 292  PLVIVEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLC 351
             + I   +R  + ++++  P G+  A+ Y+   F+  SI  V+ TL+EA+ +VVLV+ L 
Sbjct: 301  AIEISNQVRAAMAELKKNFPEGLDYAIVYDPTVFVRGSIEAVVHTLLEAVALVVLVVILF 360

Query: 352  LGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHR 411
            L + R+ +I ++A+P+S++G   +M +FGFS+N L+L  +VLAIG+VVDDAIVVVENV R
Sbjct: 361  LQTWRASIIPLLAVPISIVGTFAVMHIFGFSINALSLFGLVLAIGIVVDDAIVVVENVER 420

Query: 412  HIEEGKSPIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVI 471
            +IE G SP  A +    E+ GP+IA+ L L AV+ PI  + GLTG  +R+FALT+A + +
Sbjct: 421  NIENGLSPRDATIKAMGEVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFSTV 480

Query: 472  VSGIVALTLSPVMSSLLLQ-PGQQHGAMAAIADRLFGTLSGVYGRVL-----AYTLAHRW 525
            +S   +LTLSP ++  LL+  G    A+    DR+FG     + RV      AY      
Sbjct: 481  ISAFNSLTLSPALAVTLLKGHGAPKDALTRGMDRVFGRFFAGFNRVFHGGSHAYGRGVTG 540

Query: 526  ISG---GVALLVCLSLPWLYLLPQR---ELAPPEDQAAVLTAIKSPQHASLEYAER---- 575
            I G      L+  L L   Y+  Q       P +D+  +++  + P  A+LE  E     
Sbjct: 541  ILGRKSAAMLIYLLLLGATYVGFQAVPPGFVPTQDKQYLVSFAQLPDGATLERTESVIRA 600

Query: 576  ---FALKLDQVMKSIAETTDTWIING-TDGPAASFGGINLSAWQAR---ERSAAQVQAQL 628
                ALK   V  ++A       ING  + P+A    + L  ++ R   E S   +  +L
Sbjct: 601  MSDIALKEPGVESAVA--FPGLSINGFINSPSAGIVFVTLKPFEERRSAELSGFAISQKL 658

Query: 629  QQAVADIEGSSIFAFQVASLP--GSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARDSGL 686
            Q     ++ + I  F    +   G+ GG  +Q+  R+ Q Y  L QTM+ ++ +A  +  
Sbjct: 659  QMKYLGVKDAFIAIFPPPPVQGLGTIGGFKLQVEDRTDQGYEALDQTMKAVQAKAAQTPE 718

Query: 687  FAVVDSDLDYNNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVI 746
             A V S      P +   +DR KAA LG+ +Q +  ++ + +G  Y+N F  FGR+Y VI
Sbjct: 719  LARVFSSYKIGMPQLYTELDRTKAAQLGVDVQDVFSAMQIYLGSLYVNDFNKFGRTYQVI 778

Query: 747  PQSIQDQRLTPAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPA 806
             Q+ +  R  P  + +   R  +G +VPL ++VR+     P+  ++++   ++ +   PA
Sbjct: 779  AQADRQFRSKPDDILKLQTRNFEGRMVPLGSIVRVTETTGPDSAMRYNAFRSADVNGGPA 838

Query: 807  PGVSMGNAVAFLEQLTAE-LPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQ 865
            PG S G A A + ++  E LP G  ++W   + Q +  G   M  F   +++++LVLAAQ
Sbjct: 839  PGYSTGQAQAAMTRILDETLPKGMGYEWTELTYQQILAGNTAMLVFPICVLLVFLVLAAQ 898

Query: 866  YESLVDPLIILVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANE 925
            YESL  P  I++ VP+ +  A+  + L     N++TQIGL  LIGL  K+ IL+V FA E
Sbjct: 899  YESLFLPAAIILIVPMCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFARE 958

Query: 926  IQVRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGM 985
            +++        A V AA +RLRP+LMT+ A   GV+PL+ +SGAGA  R  +GV +  GM
Sbjct: 959  LEIAGK-GTVEAAVEAAHLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFFGM 1017

Query: 986  LVGTLFTLFVLPTIYAWL-ARDHRVS 1010
            L  T F LF+ P  Y  + A + RV+
Sbjct: 1018 LGVTFFGLFLTPVFYVLMRALEKRVT 1043