Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1020 a.a., Cation/multidrug efflux pump from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  612 bits (1579), Expect = e-179
 Identities = 359/1012 (35%), Positives = 596/1012 (58%), Gaps = 22/1012 (2%)

Query: 6    VFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQGFVTQ 65
            V +RRPVLA+V S  I+L G+  M  L +R+YP ++   I + T Y GA+A++++  +T+
Sbjct: 7    VSIRRPVLAIVFSLTILLFGIIGMTFLGVREYPSVDPPIINVRTTYVGANADVIEAQITE 66

Query: 66   PITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLPEKAYD 125
            P+ ++++ + GI  L+S+S  G S IT+   +  D   A  +   KV++ +  LP  A  
Sbjct: 67   PLEESINGISGIKSLTSTSNDGTSNITVEFDVGADMEAAANDVRDKVSRAQRNLPPDAEP 126

Query: 126  PVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQRLAMR 185
            PVV  +  DS  + ++   S+  S+ +LSD    + + +   I GV++V+ +G +  AMR
Sbjct: 127  PVVSKADADSEPIVFLNVKSEQKSLLQLSDIADNIFKERLQTIPGVSEVRIWGEKEYAMR 186

Query: 186  LWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDFRELII 245
            L +D  +MA  GVT  DV   V++ N +   G++ G  +   ++  + L+  ++F  LII
Sbjct: 187  LRMDPIRMASYGVTPLDVLTKVQSENVELPSGRIEGSTIELSVRTKSRLSTPDEFNNLII 246

Query: 246  RNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGIRQLLPQ 305
            +    ++VR +D+G  EL+    +T    DG P V + L P P  N + IV+   + L  
Sbjct: 247  KESENNIVRFQDVGNAELAPLNERTVLKRDGVPMVGVVLVPLPGSNSIDIVDEFYRRLEF 306

Query: 306  IQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLIAVVAI 365
            I++ LP  + + + +++  +I  SI EV  T++ A L+VV +I+L L   R+  I V+ I
Sbjct: 307  IKKDLPEDIELGIGFDSTEYIRNSISEVQETILLAFLLVVAIIFLFLRDWRTTFIPVITI 366

Query: 366  PLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPIAAALA 425
            P+S++G   +M    FS+N+LTLL +VL+IGLVVDDAIVV+EN++  IE+G+ P AAA  
Sbjct: 367  PISLVGVFFIMYTMDFSINVLTLLGIVLSIGLVVDDAIVVLENIYSKIEKGEQPEAAAEK 426

Query: 426  GAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALTLSPVMS 485
            GA EI   VIA T+ LAAV+ P+  + G TG LFREF + +AG+VI+S  VALT++P++S
Sbjct: 427  GAEEIFFAVIATTIALAAVFLPVIFLTGTTGRLFREFGVVVAGSVIISSFVALTMTPMLS 486

Query: 486  SLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSLPWLYLLP 545
            S LL+  ++H     + +  F  L+  Y   L + +  RW+S  + L +   +  L+   
Sbjct: 487  SKLLKKREKHNWFYNVTEPGFLWLNKKYEAALVWFMQFRWVSFIIILAMGGGIYLLFNTI 546

Query: 546  QRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAET--TDTW-----IING 598
              ELAP ED+  +   +  P+ A+ EY +R    +D+++  +  T  +D W     + + 
Sbjct: 547  PSELAPTEDRGEMRINMSGPEGATFEYMDRV---IDELLYEMMTTIPSDVWDSFISVTSP 603

Query: 599  TDGPAASFGG-INLSAWQARERSAAQVQ-----AQLQQAVADIEGSSIFAFQVASLPGSS 652
              G A++  G I +    A +R+ +Q       A++ +   D++    FA Q  S+    
Sbjct: 604  GFGTASTNSGFIRVRLVDASQRTVSQQAVFEDVAEILRKKTDVKA---FASQPQSIGDRR 660

Query: 653  GGLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAAS 712
            GG+P+Q VL+ AQ+  +L + +         S +F   D +L +  P ++V +DR KA +
Sbjct: 661  GGMPIQYVLQ-AQNLEKLKEVIPAFMDEVTQSPIFQFSDINLKFTKPEIEVEIDREKARN 719

Query: 713  LGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVRAEDGSL 772
            +G+S+Q I  +L +    Q  + F + G+ Y V+ +  ++ R  P  L   YVRAE+G L
Sbjct: 720  IGVSVQEIARTLQLSYSGQRFDYFIMNGKQYQVVGEMQKEDRNEPINLRMLYVRAENGQL 779

Query: 773  VPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAE-LPPGFSH 831
            V L  LV +  +  P +L +F++  ++T+ A  AP  ++G+ +  ++++ AE L   F+ 
Sbjct: 780  VQLDNLVNITEKSTPPQLYRFNRFVSATVSAGLAPKYTIGDGLDEMDRIAAEVLDESFTT 839

Query: 832  DWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLA 891
            D    S+++ +   +L++AFL AL++IYLVL+AQ+ES  DPL I++TVPL++ GALL L 
Sbjct: 840  DVAGVSKEFRESSNSLIFAFLFALILIYLVLSAQFESFTDPLTIMITVPLALFGALLSLW 899

Query: 892  LGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLM 951
            LG  TLNI++QIG++ LIGL++K+GIL+V FAN+ +    L+   AI+ AA  R RP+LM
Sbjct: 900  LGGYTLNIFSQIGIIMLIGLVTKNGILIVEFANQRKAH-GLEVDEAIIGAAVARFRPILM 958

Query: 952  TTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWL 1003
            T+ +   G+LP+  A GAGA SR  +GV ++ G+++ T+ TLFV+P +Y +L
Sbjct: 959  TSLSTILGILPIALALGAGAESRSPMGVAVIGGLVLSTILTLFVIPGVYTYL 1010



 Score = 55.1 bits (131), Expect = 3e-11
 Identities = 69/318 (21%), Positives = 139/318 (43%), Gaps = 24/318 (7%)

Query: 701  VKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGR-SYDVIPQSIQDQ-RL-TP 757
            +++R+D  + AS G++       L VL   Q  N     GR     I  S++ + RL TP
Sbjct: 185  MRLRMDPIRMASYGVT------PLDVLTKVQSENVELPSGRIEGSTIELSVRTKSRLSTP 238

Query: 758  AALSRQYVRAEDGSLVPLATLVRLDIEVAPNR-LLQFDQQNASTLQAIPAPGVSMGNAV- 815
               +   ++  + ++V    +   ++     R +L+ D      +  +P PG +  + V 
Sbjct: 239  DEFNNLIIKESENNIVRFQDVGNAELAPLNERTVLKRDGVPMVGVVLVPLPGSNSIDIVD 298

Query: 816  ---AFLEQLTAELPPGFSHDWQSESRQYVQEGFA-----LMWAFLAALVVIYLVLAAQYE 867
                 LE +  +LP         +S +Y++   +     ++ AFL  + +I+L L     
Sbjct: 299  EFYRRLEFIKKDLPEDIELGIGFDSTEYIRNSISEVQETILLAFLLVVAIIFLFLRDWRT 358

Query: 868  SLVDPLIILVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQ 927
            + +     ++T+P+S+ G    +     ++N+ T +G+V  IGL+    I+++       
Sbjct: 359  TFIP----VITIPISLVGVFFIMYTMDFSINVLTLLGIVLSIGLVVDDAIVVLENIYSKI 414

Query: 928  VRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLV 987
             +     AAA   A +I    V+ TT A+    LP++F +G         GVV+   +++
Sbjct: 415  EKGEQPEAAAEKGAEEIFFA-VIATTIALAAVFLPVIFLTGTTGRLFREFGVVVAGSVII 473

Query: 988  GTLFTLFVLPTIYAWLAR 1005
             +   L + P + + L +
Sbjct: 474  SSFVALTMTPMLSSKLLK 491