Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1048 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  512 bits (1319), Expect = e-149
 Identities = 345/1018 (33%), Positives = 549/1018 (53%), Gaps = 29/1018 (2%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            + FT +FVRRP+LA V+++L+++ GL A+  + +R+ P ++  +I++ T Y GA+ E + 
Sbjct: 12   LAFTALFVRRPILAAVLNTLLVVAGLAALVGVEVRELPDVDRPSISVRTTYEGAAPETID 71

Query: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120
              VTQ I  AV+ V GI  ++SSSQ G S +T+    N D   A  +    + +V  +LP
Sbjct: 72   QEVTQTIEGAVARVSGIKSIASSSQFGTSRVTMEFSDNVDMAVAANDVRDAIGRVTNQLP 131

Query: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180
            + A +P +  +  DS  +  +   S +LS+ +L+  +   +  + + +DGVA V+ +G Q
Sbjct: 132  DDADEPQIIKADSDSQPIMRLAVTSSTLSMEDLTKLVDDEIIDRLAAVDGVADVELYGDQ 191

Query: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240
                R+ L+   +A RG+T  DV+ A+ +       G ++       ++    LT+ EDF
Sbjct: 192  EKVFRVDLNQAALASRGLTVTDVSNALASAALDVPAGSLKSTTQDIVVRATASLTKPEDF 251

Query: 241  RELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGIR 300
              L+I+    D +RLRD+ TV L A    TS   +G   V LG+      N L I  G++
Sbjct: 252  SNLLIK----DNIRLRDVATVMLGADDQSTSLRSNGVQGVGLGVIRQAQSNTLNISTGVK 307

Query: 301  QLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLI 360
              +  +   LP G  + +  + A FI+ ++HEV   L  + LIVV+V++L     R+ LI
Sbjct: 308  AAVDAMSANLPEGTRIVVTSDDAVFIEGALHEVELALGLSALIVVVVLYLFFRDWRATLI 367

Query: 361  AVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPI 420
              + +P++++G    + M GFS+N+LTLLA+VLA GLVVDDAIVV+EN+ R   EG  P 
Sbjct: 368  PAITMPVALIGTIVAIYMVGFSVNILTLLAIVLATGLVVDDAIVVLENIVRRRAEGMGPR 427

Query: 421  AAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALTL 480
            AAA+ G +E+   VIA T TLAAV+ P+  + G  G LFREF   LA AV +S I ALTL
Sbjct: 428  AAAVLGTQEVFFAVIATTATLAAVFIPLSFLPGQLGGLFREFGFVLAFAVGLSSITALTL 487

Query: 481  SPVMSSLLLQPGQQHGAMAAIADRLFGTL-SGVYGRVLAYTLAHRWISGGVALLVCLSLP 539
             P+++S +L+ G +      +    FG + +  Y   LA  L +  I   VAL+    L 
Sbjct: 488  CPMLASRMLKQGLKEPTGPLM---WFGNVFASTYKTTLAACLNNPLIVIVVALIFS-GLS 543

Query: 540  WL-YLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLD---QVMKSIAETTDTWI 595
            W+ + + Q EL P ED+A+V+  + +PQ  SLEY      +++   Q ++   E  + + 
Sbjct: 544  WIAFGMIQNELTPREDRASVMMRVTAPQGVSLEYTRDQLQRIEENLQPLRDSGEIRNVYS 603

Query: 596  INGTDGPA-ASFGGINLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASL--PGSS 652
            I G +G +   F  + L+ W  RER+  Q+ A +  A   +      A Q  SL   G+ 
Sbjct: 604  ITGMNGSSNTGFMVLTLAPWADRERTQNQIAADVTSAANKVPALRGNAMQPNSLRIRGAG 663

Query: 653  GGLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAAS 712
             GL + MV     +YP L +  + L     + GLF     D + N   + V +DR +A+ 
Sbjct: 664  NGLQMAMV---GSNYPALTEATQKLLLSMEEGGLFDTPRLDNEPNQAQLSVSIDRERASD 720

Query: 713  LGISMQAIGESL-GVLVGEQYLNRFALFGRSYDVIPQSIQDQRL---TPAALSRQYVRAE 768
            LGI +  +  S+  +L G   ++ F       D IP  +         P  L   +++  
Sbjct: 721  LGIDITGLSRSMQSLLEGRSIVDVFV----DGDAIPVRLLSSTRPINDPTDLENVFLKTG 776

Query: 769  DGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLT-AELPP 827
            DG +VP++ +  L       +L +  Q  +    A    GVS+G A+  + +L  + +P 
Sbjct: 777  DGKIVPMSVIATLKENAVAPQLNREQQLPSVGFTANLKDGVSLGQAMEKVNELAQSVMPS 836

Query: 828  GFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGAL 887
            G       E+    +    ++  F  A+ +I+LVLAAQ+ES++  +II+ TVPL +  A+
Sbjct: 837  GARLLPLGEAATLEENSSGMLLTFGFAIAIIFLVLAAQFESVLSSVIIMSTVPLGLACAV 896

Query: 888  LPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLR 947
            + L +  ++LN+Y+QIGLV L+G+++K+GIL+V FAN ++ +    R  AI +A  IRLR
Sbjct: 897  IALLVTGSSLNVYSQIGLVLLVGVMAKNGILIVEFANHLRDQGATVR-EAIEKATSIRLR 955

Query: 948  PVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLAR 1005
            PV+MT  A   G +PL+ A GAGA +R  LG VIV G+   TL TL++ P  Y  +AR
Sbjct: 956  PVMMTMIATILGGVPLVLAQGAGAEARIALGWVIVGGLGFATLVTLYITPVSYLLIAR 1013