Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 439 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodanobacter sp000427505 FW510-R12

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 5/176 (2%)

Query: 165 APFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQVLALTVDAV 224
           AP  G +    V +GQ + AG+T+++L  ++ + V  AL +  A  VH+G  + ++ DA+
Sbjct: 218 APQTGMVTALEVQEGQRVGAGQTLMTLNSLATVWVEAALPQAVAGTVHSGTPVTVSADAL 277

Query: 225 RGQDFQARVVAVDPVVSTA-RLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPET 283
            GQ FQ  V  + P +  A R  + +  L NP+ QL PGM+  V+L+      V  VP  
Sbjct: 278 PGQVFQGSVETLLPDLDNATRTQRARIVLANPRAQLSPGMFVTVQLNPVAGEAVAVVPSD 337

Query: 284 AITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQ 339
           A+  T     V VA  D     R   + V TG    G  EI  GL  G++VVVSGQ
Sbjct: 338 ALIATGVQTRVIVAEAD----GRFRPLAVRTGRSADGYTEILDGLQGGEKVVVSGQ 389



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 16  ALAAAYALVGSGSAPPAA---AVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAE 72
           ALA   AL G+ SA   A   A     +V   TA +++ AR+   +        + + A 
Sbjct: 167 ALAEYDALQGAQSADAKALRVAARERLRVLGLTAAEIRTARRGAGAA-------ITLDAP 219

Query: 73  MPGRITRIAFESGQTVAAGQLLVQLN 98
             G +T +  + GQ V AGQ L+ LN
Sbjct: 220 QTGMVTALEVQEGQRVGAGQTLMTLN 245