Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 391 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

 Score =  106 bits (265), Expect = 9e-28
 Identities = 96/358 (26%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 22  ALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIA 81
           A  G  +APP   V     V    AE+  L  +  A G +E++  V V + +   + ++ 
Sbjct: 44  AASGQKAAPPPRVV----AVLAGKAERTSLPVRVEALGTVESMVTVPVRSRVAAAVEKVG 99

Query: 82  FESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRK-------LRAMNAVSQ 134
           F  G TV  G LL QL+     A  +Q +A L    V L+++ +       L   NAVSQ
Sbjct: 100 FADGATVKEGDLLYQLDPRVIDAQILQAEATLNRDKVQLEKNLRDVERYAGLATRNAVSQ 159

Query: 135 ELLDNAATAVDVARGELQHVEA----LIAQKA---IRAPFAGKLGIRRVHQGQYLAAGET 187
             +D+A T  DV +  +   EA    L  Q+    IR+P  G++G+  V  G  +   +T
Sbjct: 160 VQVDDARTTADVQKAVVAQDEANLTALRVQRGYYEIRSPATGRIGVSSVRPGTVIRVDDT 219

Query: 188 IVSLADISQLHVNFAL------GEQAAPEVHAGQVLALTVDAVRGQDFQARVVAVDPVVS 241
           + ++  ++ ++V F L      G +AA +      +  T + + G         ++P   
Sbjct: 220 LATVRQLAPIYVAFGLPERYIAGLRAAKDAKVSFTIQGTGETISGGTVAVIDNTIEPQTG 279

Query: 242 TARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDP 301
           T   +  +A  PN   +L PG    V +       V+AVP  A+     G  VF+     
Sbjct: 280 T---LTARAIFPNADERLWPGALGAVTVTLRIEDNVVAVPSEAVQNGQDGPFVFIVDDGI 336

Query: 302 QHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQLKLSDGMPVEPVAQDSLQAS 359
            H        VT      GR  I  GL  G+ VV  GQL L +G  V    + ++ A+
Sbjct: 337 AHVR-----PVTVTRTVDGRSVIAKGLDGGETVVTDGQLSLREGSRVSVRTRTAVPAT 389