Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 388 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

 Score =  112 bits (280), Expect = 2e-29
 Identities = 100/360 (27%), Positives = 159/360 (44%), Gaps = 29/360 (8%)

Query: 13  VAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQ-LARQRFASGELEAVNQVQVAA 71
           VAGALA    L+G+ +        P     +ATA + + +       G ++A N + V  
Sbjct: 14  VAGALAWQQGLIGAAAQASKPKAPPPPIPVIATAVKTEDVPVYGEGIGTVQASNTITVKV 73

Query: 72  EMPGRITRIAFESGQTVAAGQLLVQLNDAP-------EQALRVQLQARLRNADVVLQRSR 124
            + G +T++ F+ GQ V AG +L Q++  P        +A R + +A L NA     R +
Sbjct: 74  RVDGELTKVVFKEGQEVKAGDILAQIDQRPFAAALAQAKAARAKDEALLANAKADYDRYK 133

Query: 125 KLRAMNAVSQELLDNAATAVDVARGELQHVEALIAQK-------AIRAPFAGKLGIRRVH 177
            L    A SQ+ LD  +  V   + ++   EA I           IRAP +G+ G+R V 
Sbjct: 134 VLVPKQAASQQQLDTQSALVAQYQAQISGDEAAIDNAQIQLDYTTIRAPISGRTGVRLVD 193

Query: 178 QGQYLAA--GETIVSLADISQLHVNFALGEQAAPEVHAG------QVLALTVDAVRGQDF 229
           +G  + A  G  +V +  +  + V F L +    ++ A         LA   D V  +  
Sbjct: 194 EGNIVHANDGGGLVVITQLKPVAVVFTLPQDRLDDMQAALARGPVSALAFRRDGVT-EVG 252

Query: 230 QARVVAVDPVVST-ARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPETAITYT 288
           +  V  +D  +S+    ++++A  PN   +L PG +  V++       V+ +P  AI   
Sbjct: 253 EGTVALIDNQISSDTGTLRIKAVFPNDDLKLWPGAFVNVKVLLDTHHNVITIPAQAIQRG 312

Query: 289 AYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQLKLSDGMPV 348
             G  V+V   D      V +  VTT     G   I +GL  GD+VV+ GQ KL  G  V
Sbjct: 313 PDGFYVYVVKPD----ATVEKRAVTTSGISAGIASIATGLVAGDQVVIDGQYKLIPGARV 368