Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 389 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

 Score =  104 bits (259), Expect = 5e-27
 Identities = 102/371 (27%), Positives = 161/371 (43%), Gaps = 35/371 (9%)

Query: 6   LLAWAGAVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLAR-QRFASGE---- 60
           L+   G    AL  A  L        +   W  T    A   QV++ + Q+ A+G+    
Sbjct: 14  LMGVGGLTLAALLVANGLHARTLHEQSVTAWTET----AAIPQVRVFQPQQNAAGDTLRL 69

Query: 61  ---LEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLND-------APEQALRVQLQ 110
              LEA ++  + A + G +     + G  V AGQ+L +++        A   A  +Q Q
Sbjct: 70  PAHLEAWSKAPIHARVSGYLKDWKADIGTQVKAGQILAEIDSPDLDQQMAQTHARLIQEQ 129

Query: 111 ARLRNADVVLQRSRKLRAMNAVSQELLD----NAATA---VDVARGELQHVEALIAQKAI 163
           A  R A     R + L A ++VS++  D    NAA A    + A  +   + AL + K I
Sbjct: 130 ANARLAQTTATRWQNLLASHSVSRQEADEKTSNAAAAKANAEAAAADYARLSALESYKTI 189

Query: 164 RAPFAGKLGIRRVHQGQYLAAGET----IVSLADISQLHVNFALGEQAAPEVHAGQVLAL 219
           RAPFAG +  R    GQ + A       + ++AD  QL +   + +  A  +H G    L
Sbjct: 190 RAPFAGTITARNTDIGQLIKADTDSDPELFNIADTHQLRLYVPVPQNYAAVIHPGLEAEL 249

Query: 220 TVDAVRGQDFQARVVAVDPVVST-ARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVL 278
           TV    G+ F+AR++     +   +  +  Q    NP G+L PG YA   L     +  +
Sbjct: 250 TVPEHPGEHFKARLIGDSTAIDRRSGTLLAQFVADNPNGELLPGDYAEATLPIPADTHGV 309

Query: 279 AVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSG 338
           ++P +A+ + A G  V V         +   + +  GE    R+ I  GL P DRVV + 
Sbjct: 310 SIPASALIFRAQGTQVAVLDAHNHVHLQTIHIGLDLGE----RLVIDQGLKPVDRVVDNP 365

Query: 339 QLKLSDGMPVE 349
              L +G PV+
Sbjct: 366 PDALREGDPVQ 376