Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 433 a.a., secretion protein HlyD from Pseudomonas simiae WCS417

 Score =  112 bits (279), Expect = 2e-29
 Identities = 94/324 (29%), Positives = 146/324 (45%), Gaps = 31/324 (9%)

Query: 57  ASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLND-------APEQALRVQL 109
           A G + A+N + V + + G + +IAFE GQ V AG LL +++           Q   +Q 
Sbjct: 84  ALGTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEIDPRSYQNALLQAQGTLMQN 143

Query: 110 QARLRNADVVLQRSRKLRAMNAVSQELLDNAAT-------AVDVARGELQHVEALIAQKA 162
           QA+L+NA V +QR R L A ++++++ LD A          V   +G +   +  +    
Sbjct: 144 QAQLKNAQVDVQRYRDLYAQDSIAKQTLDTAEALVLQYQGTVKTNQGAVDDAKLNLEFTK 203

Query: 163 IRAPFAGKLGIRRVHQGQYLAAGET--IVSLADISQLHVNFALGEQAAPEV----HAGQV 216
           IRAP +G++G+R+V  G  +AA +T  +  +     + V F L E     V    HAG  
Sbjct: 204 IRAPISGRVGLRQVDVGNLVAANDTTFLAVITQTQPISVAFTLPENTLETVLTRYHAGN- 262

Query: 217 LALTVDAVRGQDFQARVVAV-----DPVVSTARLVQVQAALPNPQGQLQPGMYAGVRLDA 271
             L V+A    D + + V V     + +  T   ++ +A   N    L P  +  V L A
Sbjct: 263 -KLPVEAWDRGDVKQQAVGVLQSLDNQIDVTTGTLKFKARFDNKDQALFPNQFVNVHLLA 321

Query: 272 AQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPG 331
                V+  P  AI +   G  V+V   D     +V    +  G+       I  GL  G
Sbjct: 322 DTLHNVVLAPSAAIQFGNTGTFVYVLDGD----KKVKVQPLVVGDTDGDNTVIKEGLKAG 377

Query: 332 DRVVVSGQLKLSDGMPVEPVAQDS 355
           DRVV+ G  +L DG  +E V   S
Sbjct: 378 DRVVLEGTDRLKDGSEIEVVNDSS 401