Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 411 a.a., Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA from Variovorax sp. SCN45

 Score =  119 bits (298), Expect = 1e-31
 Identities = 105/368 (28%), Positives = 161/368 (43%), Gaps = 31/368 (8%)

Query: 5   TLLAWAGAVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAV 64
           TL+   G  A AL    A     + P AA   P  +V     +Q ++   R   G + ++
Sbjct: 27  TLVVLLGGGAWALTQQSA---HAAKPEAAQAPPPVQVTTVRVKQQEVQTYRSGIGTVASM 83

Query: 65  NQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLND-------APEQALRVQLQARLRNAD 117
             V V A + G++ ++ F  GQ V AGQ+L QL+        A  QA R + QA L NA 
Sbjct: 84  ATVTVKARIDGQLDKVGFVEGQDVKAGQMLAQLDPRTLQAQLAQAQATRAKDQATLVNAR 143

Query: 118 VVLQRSRKLRAMNAVSQELLDNAATAVDVAR-------GELQHVEALIAQKAIRAPFAGK 170
             L+R   L A +A +Q+ LD     V+           ++Q+ E  ++   I +P  G+
Sbjct: 144 ADLKRYTTLIAQDAATQQQLDTQKALVNQLEATVQNDAAQVQYAEVQLSFTRISSPMDGR 203

Query: 171 LGIRRVHQGQYLAAGET--IVSLADISQLHVNFALGEQAAPEVHAGQ--------VLALT 220
           +G R V  G  + A +T  +V +  I  + V F L E A  +++  Q        V+A  
Sbjct: 204 VGARLVDPGNIVHAADTNGLVVINQIDPIAVQFTLPEDAVQDINRLQQKSSQPLSVVAYD 263

Query: 221 VDAVRGQDFQARVVAVDPVVSTARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAV 280
               +       ++  + + +T+  VQ++ +  NPQ  L PG Y  VRL   +    L V
Sbjct: 264 RSGAQMLGTGKLILLNNQIDTTSGTVQLKGSFANPQHALWPGQYVNVRLQLERRPDSLTV 323

Query: 281 PETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQL 340
           P  A+        V+V   +     +VS V V   +   G   I  GL+   RVVV GQ 
Sbjct: 324 PAAAVQRGQDNTYVWVVDDE----NKVSNVPVHVVQIADGTAVIDKGLSVNQRVVVDGQY 379

Query: 341 KLSDGMPV 348
           KL  G  V
Sbjct: 380 KLKPGSTV 387