Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  114 bits (286), Expect = 4e-30
 Identities = 101/370 (27%), Positives = 167/370 (45%), Gaps = 37/370 (10%)

Query: 12  AVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAA 71
           AVA A+   Y+     +  PAA    AT V++AT    ++      SG LEAV +V V +
Sbjct: 28  AVAAAVVGMYSFKAEANNTPAAP--QATPVSVATVASSEINAWDEFSGRLEAVERVDVRS 85

Query: 72  EMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADV-------VLQRSR 124
            + G +  + F  G  V  G LLV ++ AP  A   + +A++ +A           +R++
Sbjct: 86  RVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERAK 145

Query: 125 KLRAMNAVSQELLD---NAATAVD----VARGELQHVEALIAQKAIRAPFAGKLGIRRVH 177
           +L    A++Q   D   NA    D     A+  LQ     +    +RAP +G++G   V 
Sbjct: 146 RLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVT 205

Query: 178 QGQYLAAG---ETIVSLADISQLHVNFALGEQAAPEV---------HAGQVLALTVD--- 222
            G  +AAG     + +L  +S ++ +F   EQ                GQ+ ++ V    
Sbjct: 206 VGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPTGSSARGQIESIPVQMGT 265

Query: 223 -AVRGQDFQARVVAVD-PVVSTARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAV 280
             + G  F  ++  +D  V + +  V+V+A+  N  G L PG +A +R+  A+  + L V
Sbjct: 266 AGLDGTPFTGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMGQARSDSALLV 325

Query: 281 PETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQL 340
            E AI      + V V  +D    ++ +  +VT G    G   ++ GL  GDRV+V+G  
Sbjct: 326 SERAIGTDQNKKFVMVVGED----SKATYREVTLGASINGLRVVSKGLKAGDRVIVNGLQ 381

Query: 341 KLSDGMPVEP 350
            +  G  V P
Sbjct: 382 HIRPGALVAP 391