Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 421 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  116 bits (290), Expect = 1e-30
 Identities = 110/381 (28%), Positives = 172/381 (45%), Gaps = 44/381 (11%)

Query: 5   TLLAWAGAVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAV 64
           T+ A A  V      + A  G+G AP  A   P   V +A    V L  +    G LEA 
Sbjct: 18  TVAAVALLVLAGCGKSDAPAGAG-APGGAHPAPEVGVVVAAPGDVGLVTE--LPGRLEAS 74

Query: 65  NQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADV------ 118
              QV A   G + +  F  G  V AGQLL +++ AP  A     QA L  A+       
Sbjct: 75  RVAQVRARASGILLKREFREGSDVKAGQLLFRIDPAPLAAALQNAQATLARAEANAVQAK 134

Query: 119 -VLQRSRKLRAMNAVSQELLDNAATA-----VDVARGE--LQHVEALIAQKAIRAPFAGK 170
            +  R + L   NAVS++    A  +      DVA G   +Q  +  +    + +P +G+
Sbjct: 135 ALADRYKPLVEANAVSKQEYATAVASQKTAEADVASGRAAVQTAKINLGYADVTSPISGR 194

Query: 171 LGIRRVHQGQYLAAGET--IVSLADISQLHVNFALGEQAAPEV-------------HAGQ 215
           +G   V +G  +  GE   +  +  I+ ++VNF    Q+A +V              AG 
Sbjct: 195 IGRALVTEGALVGQGEATELAVVQQINPVYVNFT---QSATDVLKLRRALADGQYKRAGS 251

Query: 216 VLALTVDAVR--GQDF--QARVVAVDPVV-STARLVQVQAALPNPQGQLQPGMYAGVRLD 270
             A +V  V   G ++  + +++  D  V ST   + ++A +PNP+G+L PG+Y  VRL+
Sbjct: 252 EEAASVRVVLEDGSEYALEGKLLFSDLTVDSTTGQIMLRAEVPNPKGELLPGLYVRVRLE 311

Query: 271 AAQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTP 330
            AQ +  + +P+ A+T T  G TV V  +D +   R  ++      +W     +  GL  
Sbjct: 312 QAQATNAITLPQQAVTRTQQGDTVTVVDKDGKLSKRNVKISAAKDNQW----VVLDGLKA 367

Query: 331 GDRVVVSGQLKLSDGMPVEPV 351
           G++V+V G  KL    P  PV
Sbjct: 368 GEQVMVDGFQKLQMMPPGTPV 388