Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 369 a.a., Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system from Variovorax sp. SCN45

 Score =  259 bits (663), Expect = 6e-74
 Identities = 160/369 (43%), Positives = 216/369 (58%), Gaps = 7/369 (1%)

Query: 1   MNKRTLLAWAGAVAGALAAAYALVGSG-SAPPAAAV---WPATKVALATAEQVQLARQRF 56
           MNK++ + W GA    L    A  G      PA A     P  KVA+ATA++ Q+AR   
Sbjct: 1   MNKQSRV-WLGASLATLVLGGAGFGLAMKLRPAHAEGGGMPPAKVAVATAQKTQVARFLS 59

Query: 57  ASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNA 116
             G LEA  QV+V AE+ GR+ +I F  G  V AGQLLVQLNDAPEQ    +L A+  NA
Sbjct: 60  GIGTLEANRQVEVPAEVEGRVAKILFTPGGEVRAGQLLVQLNDAPEQGDMERLTAQRANA 119

Query: 117 DVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEALIAQKAIRAPFAGKLGIRRV 176
             +L+R+R+L    A +QE L+ A  A D A G+L+  +A++ QK I+APF G LGIRRV
Sbjct: 120 KALLERTRRLLPQQAATQEQLEQAQAAFDQASGDLRRAQAVLEQKRIKAPFDGVLGIRRV 179

Query: 177 HQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQVLALTVDAVRGQDFQARVVAV 236
           + GQ++ AG+ +VSL D   L  N  L E A P +   Q +AL+VDA  G+ FQ R+  +
Sbjct: 180 NLGQFVRAGDALVSLTDSRTLFANLTLPETALPVLKRNQQVALSVDAYPGRVFQGRLSTI 239

Query: 237 DPVV-STARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPETAITYTAYGQTVF 295
           +P + S  R V++QA + N  G L PGM+   ++        + VPETAITY+ +G +VF
Sbjct: 240 EPQIGSDTRTVRLQATIDNADGALTPGMFVNGKVALPARPDAITVPETAITYSTHGDSVF 299

Query: 296 VA-TQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQLKLSDGMPVEPVAQD 354
           V    +   G    +V V  GER  G V I +GL PGD+VV SGQL+L  G  V P A+D
Sbjct: 300 VVRPAEKGDGFTAQQVFVKAGERQDGLVVIENGLAPGDKVVTSGQLRLYTGAAVMPTAKD 359

Query: 355 SLQASQGGR 363
           +L  +Q  R
Sbjct: 360 TLALAQEAR 368