Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 415 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  112 bits (280), Expect = 2e-29
 Identities = 103/354 (29%), Positives = 155/354 (43%), Gaps = 29/354 (8%)

Query: 15  GALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFA-SGELEAVNQVQVAAEM 73
           GA    +  + +  A  A     A +       +   A Q  +  G L+   Q  ++A  
Sbjct: 47  GAARTVFVRIANARALEAGTTERAKQYVQTALPRTPTAGQTLSLPGTLQGFVQSPISARA 106

Query: 74  PGRITRIAFESGQTVAAGQLLVQLNDAPE--------QALRVQLQARLRNADVVLQRSRK 125
            G + R   + G  V  G+LL ++ + PE         A R Q  + L  A     R   
Sbjct: 107 SGYLKRWTKDIGSRVEKGELLAEI-ETPEIDQQLSQAVAARAQAASGLELARSTADRWEA 165

Query: 126 LRAMNAVSQELLDNAATAVDVARGELQHVEALIAQ-------KAIRAPFAGKLGIRRVHQ 178
           LR  + VSQ+ LD   +AV  A   +   +A + +       K + APFAG +  R V  
Sbjct: 166 LRKKDVVSQQELDERRSAVAQATSNVAAADANVQRLKQTEGFKRVVAPFAGVITRRNVDV 225

Query: 179 GQYL------AAGETIVSLADISQLHVNFALGEQAAPEVHAGQVLALTVDAVRGQDFQAR 232
           G  +       AG  +  LA    L V   + +  A  V AGQ + +T   +RGQ F+ +
Sbjct: 226 GDLIDAGSGGGAGRALFLLAQTDPLRVYINVPQAYAQLVKAGQPVVVTQAELRGQTFKGQ 285

Query: 233 VV-AVDPVVSTARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPETAITYTAYG 291
           V      + +T R++QV+ +LPN  G L PG Y  V L  A  S  L+VP  A+ + A G
Sbjct: 286 VARTAGSIDTTTRMMQVEVSLPNSDGALLPGAYVQVSLPLA-ASRTLSVPSNALLFRAEG 344

Query: 292 QTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQLKLSDG 345
               +A  DPQ   RV+   VT G  +   VE+  GL   DR+V++    L++G
Sbjct: 345 TR--IAVVDPQ--GRVNLRAVTLGRNYGENVEVIDGLEHTDRMVLNPSDSLAEG 394