Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  189 bits (481), Expect = 8e-53
 Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 30/367 (8%)

Query: 6   LLAWAGAVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVN 65
           LL  A    G      AL+ +   P      P T V+    +++Q   Q  A G L  V 
Sbjct: 6   LLLVAALALGKFLQIRALIAAVPKPG-----PQT-VSTVEVQKLQWQSQFTAVGTLNPVR 59

Query: 66  QVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRK 125
              ++ E+ G +  + F+SGQ V AG LLV+LN   + AL    +A    A  VL+R + 
Sbjct: 60  GADLSTEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKRDQA 119

Query: 126 LRAMNAVSQELLDNAATAVDVARGELQHVEALIAQKAIRAPFAGKLGIRRVHQGQYLAAG 185
             A+ AVSQ  +D     +   R +++   A++A+K+IRAPFAG+LGI  ++ GQY+ AG
Sbjct: 120 QLAVQAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVNAG 179

Query: 186 ETIVSLADISQLHVNFALGEQAAPEVHAGQVLALTVDAVRGQDFQARVVAVDPVVSTA-R 244
           + +V+L  +  ++V+F L +Q    +  GQV+ LTVD   GQ F  ++ A+ P V  A R
Sbjct: 180 DKLVTLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDAATR 239

Query: 245 LVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPETAITYTAYGQTVFVATQ--DPQ 302
            VQV+A + NP+  L PGM+A V++D       L +P TA+TY  YG TV+V  Q   P+
Sbjct: 240 NVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEPPK 299

Query: 303 HGTR---------------------VSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQLK 341
            G                         +V V TG     ++ I  GL  G  VV SGQ K
Sbjct: 300 AGAPGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQNK 359

Query: 342 LSDGMPV 348
           L +G PV
Sbjct: 360 LKNGTPV 366