Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 416 a.a., efflux RND transporter periplasmic adaptor subunit from Variovorax sp. OAS795

 Score =  110 bits (275), Expect = 7e-29
 Identities = 101/370 (27%), Positives = 165/370 (44%), Gaps = 37/370 (10%)

Query: 12  AVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAA 71
           AVA A+   ++     +AP AA       VA   + ++  A   F SG LEAV +V V +
Sbjct: 28  AVAAAVLGMHSFKAEATAPAAAQQGTPVSVAAVASSEIN-AWDEF-SGRLEAVQRVDVRS 85

Query: 72  EMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADV-------VLQRSR 124
            + G +  + F  G  V  G LL+ ++ AP  A   + +A++ +A           +R++
Sbjct: 86  RVAGAVQAVHFREGALVKQGDLLITIDPAPYAAEVERAEAQVASAQARQAFSRSEQERAK 145

Query: 125 KLRAMNAVSQELLD---NAATAVD----VARGELQHVEALIAQKAIRAPFAGKLGIRRVH 177
           +L    A++Q   D   NA+   D     ++  LQ     +    +RAP +G++G   V 
Sbjct: 146 RLWDQQAIAQREYDERVNASREADANLRASQASLQSARLNLGYTQVRAPVSGRIGKLEVT 205

Query: 178 QGQYLAAG---ETIVSLADISQLHVNFALGEQAAPEV---------HAGQVLALTV---- 221
            G  +AAG     + +L  +S ++ +F   EQ                GQ+ ++ V    
Sbjct: 206 VGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPSGASARGQIESIPVQMGT 265

Query: 222 DAVRGQDFQARVVAVD-PVVSTARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAV 280
               G  F  ++  +D  V + +  V+V+A+  N  G L PG +A +R+  A+  T L V
Sbjct: 266 SGFDGTPFIGKLQLIDNQVDARSGTVRVRASFDNKDGALIPGQFARIRMGQARNDTALLV 325

Query: 281 PETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQL 340
            E AI      + V V  +D +   R    +VT G    G   ++ GL  GDRVVV+G  
Sbjct: 326 SERAIGTDQNKKFVMVVGEDNKAMYR----EVTLGASINGLRVVSKGLKAGDRVVVNGLQ 381

Query: 341 KLSDGMPVEP 350
            +  G  V P
Sbjct: 382 HIRPGALVVP 391