Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 400 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score =  103 bits (256), Expect = 1e-26
 Identities = 106/391 (27%), Positives = 169/391 (43%), Gaps = 45/391 (11%)

Query: 2   NKRTLLAWAGAVAGALAAAYAL--VGSGSAPPAAAVWPATK----------------VAL 43
           NK      AG +   LAAA+      + SA PA A   A +                V  
Sbjct: 5   NKSRWAIAAGIIVVVLAAAWYWHSQSANSAAPAGASSQAQRPAGGGRHGMRGGALAPVQA 64

Query: 44  ATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQ 103
           ATA    + R     G + A N V V + + G++  I F+ GQ V AG LL +++ +  +
Sbjct: 65  ATAVNKAVPRYLTGLGTITAANTVTVRSRVDGQLMAIHFQEGQQVKAGDLLAEIDPSQFK 124

Query: 104 ALRVQLQ-------ARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156
               Q Q       A L NA   L R ++L   N VS++ LD   + V   +G ++  EA
Sbjct: 125 VALAQAQGQLAKDKATLANARRDLVRYQQLVKTNLVSRQELDTQQSLVSETQGTIKADEA 184

Query: 157 LIAQ-------KAIRAPFAGKLGIRRVHQGQYLAAGET--IVSLADISQLHVNFALGEQA 207
            +A          I AP  G++G+++V  G  +++G+T  IV +     + + F L E  
Sbjct: 185 AVASAQLQLDWSRITAPIDGRVGLKQVDIGNQISSGDTTGIVVITQTHPIDLVFTLPESD 244

Query: 208 APEVHAGQVLA--LTVDAVRGQDFQ----ARVVAVDPVVSTAR-LVQVQAALPNPQGQLQ 260
              V   Q     L V+A    + Q      ++++D  + T    ++++A   N    L 
Sbjct: 245 IATVVQAQKAGKGLVVEAWDRSNKQKLSEGSLLSLDNQIDTTTGTIKLKARFNNQDDALF 304

Query: 261 PGMYAGVRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQG 320
           P  +   R+  A     + +P  A+     G  V+V   D     +VS+  V TG +   
Sbjct: 305 PNQFVNARMLVATEENAVVIPTAALQMGNEGNFVWVLNDD----NKVSKHLVKTGIQDSQ 360

Query: 321 RVEITSGLTPGDRVVVSGQLKLSDGMPVEPV 351
            V I +GL+ G+RVV  G  +L++G  VE V
Sbjct: 361 TVVIAAGLSAGERVVTDGIDRLTEGAKVEVV 391