Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 97.1 bits (240), Expect = 7e-25
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 28/315 (8%)

Query: 59  GELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADV 118
           G +  +N++++  ++ G I +I  E GQ VA GQ L +++ +  QA   Q QA L++A  
Sbjct: 55  GTVVPLNEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKA 114

Query: 119 VLQRSRK-------LRAMNAVSQELLDNAATAVDVARGELQHVEALIAQ-------KAIR 164
            L+R +K       L    A++++ LD A   +  A  ++   EA +           I 
Sbjct: 115 NLERVKKDLARYEALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVIT 174

Query: 165 APFAGKLGIRRVHQGQYLAAGETIV-SLADISQLHVNFALGEQAAPEVHAGQVLALTVDA 223
           APF+G +GI +V  G  ++AG++++ +L+    + V+F + E+               D+
Sbjct: 175 APFSGTVGISQVRLGAQVSAGQSLLNTLSSNDPVLVDFVVNERDVRRFSKMMKNESLPDS 234

Query: 224 VRGQDF--------QARVVAVDPVVS-TARLVQVQAALPNPQGQLQPGMYAGVRLDAAQP 274
                F           +  +D  V   +  + ++   PNP  +L PGM   +R+     
Sbjct: 235 TFTIQFGENDVYRHHGELTTIDRAVGRQSGTINMRVEFPNPDRELIPGMTLNLRVLNQDI 294

Query: 275 STVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRV 334
              +A+P  A+T       V+V   D    + V +  V  G +    + +  GL PG ++
Sbjct: 295 GDQIAIPFKAVTEQMGEYFVYVVGDD----SVVHQQNVQLGTKVGAEIVVREGLKPGQKI 350

Query: 335 VVSGQLKLSDGMPVE 349
           VV G  KL +G  V+
Sbjct: 351 VVEGIQKLREGAKVQ 365