Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 596 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 87.4 bits (215), Expect = 9e-22
 Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 34/347 (9%)

Query: 29  APPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFE-SGQT 87
           +P A  +       + T + V+  R      E E +   Q ++ +PGRI R+    +G+ 
Sbjct: 93  SPTAMQLADIRTATVGTMDPVKTVRLNGKVQEDERLVSSQ-SSHIPGRIERLNVNFTGEY 151

Query: 88  VAAGQLLV-----QLNDAPEQALRVQLQARLRNADVVLQRSRKLRAMN-AVSQELLDN-- 139
           V  GQ++       L  A E+    Q   ++++    L +S + +  N  +S   +D   
Sbjct: 152 VRRGQVIAYIYSPDLVTAQEELFEAQ---KIKDTQPQLFKSARAKLKNWKLSDGQIDKIL 208

Query: 140 -AATAVDVARGELQHVEALIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLH 198
            + T  D              +  I A  +G +  + V+ G Y+  GE I  +A++S++ 
Sbjct: 209 ESGTPSD--------------EFPITADISGYVLSKNVNVGDYIKRGEPIYEIANLSRVW 254

Query: 199 VNFALGEQAAPEVHAGQVLALTVDAVRGQDFQARVVAVDPVVST-ARLVQVQAALPNPQG 257
           V F + E   P ++ G  +  TV ++ GQ F++++  +DPV++   R+ + +  +PN   
Sbjct: 255 VLFDVYESDMPWINKGDQVRFTVQSLPGQTFESKISFLDPVINPKTRVAKARVEVPNKDN 314

Query: 258 QLQPGMYAGVRLDAAQP--STVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTG 315
           QL+P M+A   ++A  P  S  + VP+TA+ +T     V+V       G       VT G
Sbjct: 315 QLKPEMFASGTVEATLPKKSNNVIVPKTAVMWTGKRSVVYVKNTSGS-GVSFMMRDVTLG 373

Query: 316 ERWQGRVEITSGLTPGDRVVVSGQLKLSDGMPVEPVAQDSLQASQGG 362
                   + SGL  G+ + V+G   +      + V + S+   +GG
Sbjct: 374 PGLGDSFIVESGLEEGEEIAVNGTFSID--AAAQLVGKPSMMNPEGG 418