Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 360 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  126 bits (317), Expect = 8e-34
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 9/323 (2%)

Query: 28  SAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQT 87
           S P A    P   V +      +L      +G + +   V + AE+ G +  I FE GQ 
Sbjct: 41  STPEAMTALPVDVVEVTPE---RLENNLNVTGNVLSNESVSLRAEITGLVESINFEEGQF 97

Query: 88  VAAGQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVA 147
           V  G  LV LND    A   +L+   +  +    R ++L A  A+SQE  D      +  
Sbjct: 98  VKKGTPLVYLNDDELTAQLDRLEYTKKLYEGQESRQKQLLAREAISQEEYDIILNQYNTT 157

Query: 148 RGELQHVEALIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQA 207
             +++ V+A + +  I+APF G LG+R++  G  ++  + I ++ +I  + + F++ E+ 
Sbjct: 158 LSDIKLVKAQLDKTVIKAPFDGVLGLRQISAGSVISTTDIIANIVNIDPIKIEFSIPERY 217

Query: 208 APEVHAGQVLALTVDAVRGQDFQARVVAVDPVV-STARLVQVQAALPNPQGQLQPGMYAG 266
           A +V  G  +  + +A  G   + +V A +PV+ +  R + ++A  PN   +  PGM+  
Sbjct: 218 ASQVQVGSTIEFSNNASHGLK-KGKVYAYEPVIDANTRTLTLRAISPNEDRKFLPGMFVN 276

Query: 267 VRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITS 326
           +R +       L VP  ++     G  +F+  Q+      V   QV  G R    V+I  
Sbjct: 277 IRFNLEVEEDALLVPSQSLIPELNGYKLFLVNQE----GIVQERQVQIGIRTDSEVQILD 332

Query: 327 GLTPGDRVVVSGQLKLSDGMPVE 349
           GL+PG+ V+ +G L+  +GM V+
Sbjct: 333 GLSPGEMVLTTGVLQAKEGMKVK 355