Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 396 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  118 bits (296), Expect = 2e-31
 Identities = 109/395 (27%), Positives = 170/395 (43%), Gaps = 41/395 (10%)

Query: 3   KRTLLAWAG------AVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRF 56
           KR  L  AG        AGAL        + +A    A  PA  V +A  E   + R   
Sbjct: 6   KRRALTGAGIGLAMSVAAGALFFDLPTSRNATAASTPAETPAIPVTVAKVESRDVMRWEE 65

Query: 57  ASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQAL-------RVQL 109
            SG LEAV++VQ+ + + G+I  + F  G  V  G  L  ++ AP QA            
Sbjct: 66  FSGRLEAVDRVQIRSRVAGQIKAVHFREGALVKEGDPLFTIDPAPYQAAVAGAEGQVASA 125

Query: 110 QARLRNADVVLQRSRKLRAMNAVSQELLD-------NAATAVDVARGELQHVEALIAQKA 162
           +A++  A   L R R+L     +SQ  LD       +A   +  AR  L   +  +    
Sbjct: 126 EAKVSLAKTELDRGRRLSDNRTISQSDLDQRQSSFADAEAQLRAARAALTTAQLDLGYTE 185

Query: 163 IRAPFAGKLGIRRVHQGQYLAAGET---IVSLADISQLHVNFALGEQAAPEVHA------ 213
           I AP +G++G   +  G  +AAG T   + +L  ++ ++ +F   E    +  A      
Sbjct: 186 IIAPVSGRVGRIEITAGNLVAAGSTSPALTTLVSVNPIYASFNASEGVVAKALAELPKTD 245

Query: 214 GQVLALTVDAV-------RGQDFQARVVAVDPVVSTAR-LVQVQAALPNPQGQLQPGMYA 265
           G + AL    V        G   +  +  +D  V +A   + V+A   NP G+L PG + 
Sbjct: 246 GALPALEQIPVEIGTLSDEGTPIKGTLHLIDNQVDSASGTIGVRAIFDNPDGRLIPGQFV 305

Query: 266 GVRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEIT 325
            VR+   +P   + + + AI      + VFV   +     +VS  Q+  G    G+  I 
Sbjct: 306 RVRMGEPKPENRIVISDRAIGTDQDKRFVFVVDAE----NKVSYRQIKPGAPADGQRIID 361

Query: 326 SGLTPGDRVVVSGQLKLSDGMPVEPVAQDSLQASQ 360
           SGL  GD +VV+G  ++  G  + P A+D + ASQ
Sbjct: 362 SGLAAGDTIVVNGLQRIRPGATIAPQAEDKVAASQ 396