Pairwise Alignments

Query, 591 a.a., putative acyl-CoA dehydrogenase from Pseudomonas putida KT2440

Subject, 593 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) from Variovorax sp. SCN45

 Score =  441 bits (1135), Expect = e-128
 Identities = 263/594 (44%), Positives = 346/594 (58%), Gaps = 21/594 (3%)

Query: 3   YQAPLRDMRFVLHELFDLSGHCQQLGIE-LDRDTLDGILEEAARFTGQIIAPLNRNSDEQ 61
           Y APLR+M F + E+  L   C Q   E    D ++ IL+EAA +   ++ PLNR  D Q
Sbjct: 4   YIAPLREMLFAMKEVGGLDAICAQPDHEETTPDLVEAILQEAANYAAGVLDPLNRPGDVQ 63

Query: 62  GCQWVGGEVTTPDGMRDAYRQYVEHGWASMTGPQAYGGQGLPQMASASFHEMLMAASLSF 121
           G +W  G VT  DG R+A+  + E+GW  M     +GGQGLP + S +  EM  +++L+F
Sbjct: 64  GARWHDGRVTPADGFREAWASFCENGWNGMPAATEWGGQGLPTLVSTAVLEMWKSSNLAF 123

Query: 122 RIYSGLTEGAVLALHRHGSEPLKQAYLSRMVSGEWAGTMCLTEPQAGTDLALLRTRAQPE 181
            +   LT GAV A+  HGS+ L++ +L+ MV G W GTM LTEPQAG+DLA LR+RA  E
Sbjct: 124 SLCQMLTLGAVEAIAHHGSDALQRRFLAPMVEGRWTGTMNLTEPQAGSDLAALRSRAVHE 183

Query: 182 ADGSYRITGSKIFISGGEQDLTDNIVHLVLARLPDAPAGVRGISLFLVPKLLPG-----G 236
            D  Y ++G+KIFI+ GE D+ +NIVHLVLARLPDAP GV+GISLFL PK L       G
Sbjct: 184 GD-HYHVSGNKIFITWGEHDMAENIVHLVLARLPDAPPGVKGISLFLCPKYLVNDDGTLG 242

Query: 237 ERNALGCGALEHKMGIKGASTCVMNF---DGAQGWLVGEANQGLACMFTMMNDARFQVGL 293
           ERN L C ++EHKMGI G+ T  M+F    GA G+LVGE +QGLACMFTMMN AR  VGL
Sbjct: 243 ERNDLACTSIEHKMGIHGSPTASMSFGDSGGAIGYLVGEPHQGLACMFTMMNHARLNVGL 302

Query: 294 QGLGIAEAAFQGGLAYARERLQSRSLAGPVAAEKPADPIIVHPDVRRMLLTQKTLTEGCR 353
           +G+GI+E A+Q   AYA ER+Q + L     A      I  HPDVRRML+  K  TE  R
Sbjct: 303 EGVGISERAYQRARAYALERVQGKPLISGSTA------IAGHPDVRRMLMDMKARTEAMR 356

Query: 354 MLGIYTARQLDLEHAAKSAPARQAAARRAALLIPIVKAFFTDVGQEVASLGVQVYGGHGY 413
            L  + A Q+D       A  R  A     LLIP+VK + TD  Q + S GVQV+GG GY
Sbjct: 357 ALAYFCAGQMDRAAGHADAQERAQAQALVGLLIPVVKGWCTDSAQGITSDGVQVHGGMGY 416

Query: 414 IREWGMEQLMRDSRITQLYEGTNGIQALDLIRRKVLGDGGAELNLLIDEMAPHVRAANAL 473
           + E G  Q MRD+RIT +YEGT GIQA DLI RK+  +GG  L  L+  +    R    +
Sbjct: 417 VEETGASQHMRDARITTIYEGTTGIQANDLIGRKLAREGGRTLKALLGRIDGDAR--RLV 474

Query: 474 GGLQAMATGVGQRLEEWRALSGHVVE---ACERDPQESGAVSVDFLAYSAYVLLAAMWLQ 530
               A+   +G+ L          V+   A +  P +  A +V FL  +  V+   +  +
Sbjct: 475 ESPDAVLAQIGRALAAAAQALDEAVDWLLAHDGQPAQCAAGAVPFLRLAGTVIGGWLSAR 534

Query: 531 AAVRAQATLATGSAETAFYRAKLDAATFYWRRILPRATAHREALLGGADCLMAL 584
            A  A A LA G+ +  F   K   A+ Y   +L +A   R+ + GGA   +AL
Sbjct: 535 MAEAATAQLAAGAGDAGFLGTKRATASHYAAHVLVQAPMLRDIVTGGAASTLAL 588