Pairwise Alignments

Query, 591 a.a., putative acyl-CoA dehydrogenase from Pseudomonas putida KT2440

Subject, 600 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) from Sphingobium sp. HT1-2

 Score =  514 bits (1324), Expect = e-150
 Identities = 273/595 (45%), Positives = 371/595 (62%), Gaps = 7/595 (1%)

Query: 2   NYQAPLRDMRFVLHELFDLSGHCQQLGIE-LDRDTLDGILEEAARFTGQIIAPLNRNSDE 60
           +Y AP+RD RFVL  +  L  +    G E    D ++ IL E  +   +++ P+N   D+
Sbjct: 3   SYNAPVRDTRFVLDHVVGLERYANLPGFENATPDLVEAILTEGGKIASEVLFPINAVGDK 62

Query: 61  QGC-QWVGGEVTTPDGMRDAYRQYVEHGWASMTGPQAYGGQGLPQMASASFHEMLMAASL 119
           +GC +   G VTTP G + AY Q+VE GW ++  P  +GGQGLP + + +  E +++A+ 
Sbjct: 63  EGCTRHADGSVTTPTGFKAAYDQFVEGGWTTLHAPTEFGGQGLPNVVATAVTEYVLSANQ 122

Query: 120 SFRIYSGLTEGAVLALHRHGSEPLKQAYLSRMVSGEWAGTMCLTEPQAGTDLALLRTRAQ 179
           +F +Y GLT GA+ AL   GS+  K  YL  MVSG W GTM LTEP +GTDL L++T+A 
Sbjct: 123 AFEMYHGLTAGAIAALIAKGSDEQKATYLPNMVSGVWTGTMNLTEPHSGTDLGLIKTKAV 182

Query: 180 PEADGSYRITGSKIFISGGEQDLTDNIVHLVLARLPDAPAGVRGISLFLVPKLLPG---- 235
           P  DGS+ I+G+KIFIS GE DL +NI+HLVLA+ P AP   +GISLF+VPK +      
Sbjct: 183 PNGDGSFAISGTKIFISAGEHDLAENIIHLVLAKTPGAPDSSKGISLFVVPKFIVNEDGS 242

Query: 236 -GERNALGCGALEHKMGIKGASTCVMNFDGAQGWLVGEANQGLACMFTMMNDARFQVGLQ 294
            G+RNA+ CG+LEHKMGI G +TCVMN+DGA+GWLVGE N+GLA MF MMN AR  VGLQ
Sbjct: 243 LGDRNAVSCGSLEHKMGIHGNATCVMNYDGAKGWLVGEENKGLAAMFIMMNAARLGVGLQ 302

Query: 295 GLGIAEAAFQGGLAYARERLQSRSLAGPVAAEKPADPIIVHPDVRRMLLTQKTLTEGCRM 354
           GLG  E AFQ  + YA++R Q R+L GP   E+ AD + VHPDVRRML+  K LTEG R 
Sbjct: 303 GLGQGEIAFQNAVHYAKDRRQGRALTGPKEPEEKADTLFVHPDVRRMLMEGKALTEGLRA 362

Query: 355 LGIYTARQLDLEHAAKSAPARQAAARRAALLIPIVKAFFTDVGQEVASLGVQVYGGHGYI 414
           L ++ A Q DL H+A +   RQAA     LL P++K + TD G +VA    QV+GGHGYI
Sbjct: 363 LILWGALQHDLSHSAATEEERQAADDLLQLLTPVIKGYGTDKGFDVAVSSQQVFGGHGYI 422

Query: 415 REWGMEQLMRDSRITQLYEGTNGIQALDLIRRKVLGDGGAELNLLIDEMAPHVRAANALG 474
            E G+EQ +RD+RI Q+YEGTNG+QA+DL+ RK+  +GG  L   +  +A  +  A    
Sbjct: 423 WENGVEQYVRDARIAQIYEGTNGVQAMDLVGRKLPMNGGRALQAFLKILATEIAEAKGNE 482

Query: 475 GLQAMATGVGQRLEEWRALSGHVVEACERDPQESGAVSVDFLAYSAYVLLAAMWLQAAVR 534
            L + A  + +   +  A +  +++   ++P  +GA +  ++     V    MWL+ A  
Sbjct: 483 KLASFADALEKAKGQLEAATMWLMQNAMKNPDNAGAGAHHYMHILGIVATGLMWLRMAKA 542

Query: 535 AQATLATGSAETAFYRAKLDAATFYWRRILPRATAHREALLGGADCLMALPASDF 589
           A   L  G  +  F  AKL  A F+  RI+P A + R  + GGAD LMAL    F
Sbjct: 543 ATGLLDAGEGDAGFLEAKLVTARFFAERIMPDAGSLRRKIEGGADTLMALDPDMF 597