Pairwise Alignments

Query, 515 a.a., long-chain-fatty-acid--CoA ligase from Pseudomonas putida KT2440

Subject, 540 a.a., AMP-binding domain protein from Pseudomonas putida KT2440

 Score =  211 bits (536), Expect = 7e-59
 Identities = 178/521 (34%), Positives = 251/521 (48%), Gaps = 35/521 (6%)

Query: 9   RSARYWPERLAVIDRHTRLTFAQLEQRANQLASALLAQGIATGEHVAILAPNRAELVEAE 68
           R+A  +    AVI    R  + +  QR  +LASAL  +GI  G+ VA++ PN   ++EA 
Sbjct: 26  RTAAVYGNYPAVIHGAIRRNWQETYQRCRRLASALAGRGIGRGDTVAVMLPNTPTMLEAH 85

Query: 69  VAFYKAGLVKVPVNARLAPDEVIQVLNDACSVALIADAQL------AQALLARRQEVPAL 122
                 G V   +N RL  + +  +L    +  LI D +       A ALL    E P L
Sbjct: 86  FGVPMTGAVLNTLNVRLDAEAIAFMLQHGEAKVLITDREFHAVIEGALALL----EHPPL 141

Query: 123 RLIVTLGERG-----GDITYAALLAQGSSQPISCDLPDDALAV--LHYTSGSSGVLKAAM 175
            + V   E G       + Y ALL +G  +  + + PDD      L+YTSG++G  K  +
Sbjct: 142 VVDVDDPEYGEGRAVSQLDYEALLNEGDPE-FAWEWPDDEWQAISLNYTSGTTGNPKGVV 200

Query: 176 LSVGNRKALIRKSLASPTRRAAPGDVMAHVGPITHASGMQL-MPLLAVGACNLLLERYDD 234
               +R A +       T       V     P+ H +G      + A+   ++ L R D 
Sbjct: 201 YH--HRGAYLNALGNQMTWAMGHRPVYLWTLPMFHCNGWCYPWTITALAGTHVFLRRVDP 258

Query: 235 QLLLETIQREGVTRLFLVPAMINRLVNFPDVERYDLSS-LRLVMYGAAPMAPALVKRAIE 293
           Q +L  I+   V+ L   P ++N LVN P+  +  +   ++ ++ GAAP  PA V  A+E
Sbjct: 259 QKILTLIREHKVSHLCGAPIVLNALVNMPEAAKAAIEHPVQAMVAGAAP--PAKVIGAVE 316

Query: 294 VFGPILAQGYGAGETCSLVTVLT---EQDHLCEGGDYRRLASCGRCYFETDLRVVNDHFQ 350
             G  +   YG  E    VTV     E D L      R  +  G  Y   D  +V D  Q
Sbjct: 317 QMGIKVTHTYGLTEVYGPVTVCAWHDEWDALSLEERARIKSRQGVRYPTLDGLMVADP-Q 375

Query: 351 DVQP-----GEVGEIVVKGPDIMQGYWRAPHLTAEVMRDGYYLTGDLATVDEQGYVFIVD 405
            +QP       +GEI ++G  +M+GY + P  TAE  R G++ TGDLA     GY+ I D
Sbjct: 376 TLQPVPRDGDTLGEIFMRGNTVMKGYLKNPEATAEAFRGGWFHTGDLAVWHADGYIEIKD 435

Query: 406 RKKEMIISGGFNIYPSEVEQVLYSMPQVFEAAVVGVPDEQWGEAVRAVIVLKPGMA-LQE 464
           R K++IISGG NI   EVE  LY    V EAAVV  PDE+WGE   A + LKPG    +E
Sbjct: 436 RLKDIIISGGENISTIEVEDALYKHSAVLEAAVVARPDEKWGETPCAFVALKPGREDTRE 495

Query: 465 QDVIEHCAQALAGFKKPRAVDFVSELPKNPNGKVVRRLIRD 505
            D+   C + LAGFK P+ V F  ELPK   GK+ + ++RD
Sbjct: 496 ADITSWCREHLAGFKVPKTVVF-GELPKTSTGKIQKYVLRD 535