Pairwise Alignments

Query, 412 a.a., Exonuclease SbcD from Pseudomonas putida KT2440

Subject, 410 a.a., exonuclease subunit SbcD from Dickeya dianthicola ME23

 Score =  183 bits (465), Expect = 7e-51
 Identities = 137/432 (31%), Positives = 213/432 (49%), Gaps = 46/432 (10%)

Query: 1   MRLFHTSDWHLGQSLHGQERDFEHACFLDWLLGQLRLRQPDALLIAGDIFDTVNPPVKAQ 60
           MR+ HTSDWHLGQ  + + R  EH  FL WL+ Q+   Q DA+++AGD+FD   PP  A+
Sbjct: 1   MRIIHTSDWHLGQYFYTRSRAPEHQAFLHWLVQQVEQHQADAVIVAGDVFDNGAPPSYAR 60

Query: 61  ERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMRRLRTHAL----GRVHWLDEG 116
           E    F+V    Q+    +V++ GNHDS + +    AL+  L T  +    G +H     
Sbjct: 61  EMYNQFVVAL--QRTGCQLVVMGGNHDSVATLNESRALLACLNTRVVAGFDGDIH----- 113

Query: 117 QLDAERLLIPLTNGRGKVAAWCLALPFLRPAEVTGPQLGDDYLQ-------GITQVHQQL 169
               E++L+ L N  G+  A   A+PFLRP ++   Q G   +Q        IT  +Q+ 
Sbjct: 114 ----EQVLV-LNNRAGEPGALLCAVPFLRPRDLLTSQAGQSGVQKQQALQDAITSHYQRC 168

Query: 170 IAAALKKRK---KDQALIAISHAHMAGGAVSEDSERSLIIGNAEALPAKLFDKAISYVAL 226
              A ++R+   ++  ++   H    G A S DS R + IG  +A PA+ F  A  Y+AL
Sbjct: 169 YQLACEQRETLGRELPIVLTGHLTTVGVATS-DSVRDIYIGTLDAFPAQAFPPA-DYIAL 226

Query: 227 GHLHKPQKVNREERIRYSGSPIPLSFAEINYPHQVLEVELDGNGLVSVEPRPVPRAVALQ 286
           GH+H+PQ+V + E IRYSGSPIPLSF E+N+   V  V  +   L  V    VP    +Q
Sbjct: 227 GHIHRPQRVAQCEHIRYSGSPIPLSFDELNHEKSVYLVHFEQGKLQEVAALTVPTEQPMQ 286

Query: 287 RVGPAPLGELLQQLADLPVVDLLEDPNRQPWLEVRVLLDEPQPDLRQQIETALEGKAVRL 346
            V    L E+ ++LA     D   D  +  WL++ +   +   D++Q I+   E   V +
Sbjct: 287 LV-KGNLSEIERRLAGFR--DYHGD--KPVWLDIEIATQDYLSDMQQHIQALTEPLNVDV 341

Query: 347 IRISAEYAGRNNAEDDDLAFVELAQMT-----PQDLFSR--AWEQAYGNPADDQALADFA 399
           + +      R   E      V+L + T     P ++F+R  A E         +    F 
Sbjct: 342 LLL------RRAREQQQQMLVQLEKETLEELHPAEVFARRLALESDLDEARQPRLKGLFD 395

Query: 400 LLLQDVQQEEEQ 411
            ++Q++ ++  +
Sbjct: 396 QVIQEIDEQRRE 407