Pairwise Alignments
Query, 1214 a.a., Exonuclease SbcC from Pseudomonas putida KT2440
Subject, 1007 a.a., ATPase involved in DNA repair from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 141 bits (355), Expect = 3e-37
Identities = 206/863 (23%), Positives = 364/863 (42%), Gaps = 116/863 (13%)
Query: 375 AAQDTLARLDQELAAQRSISQQAQQQ---------VADGQQQLQQLEDNQQRSVQQLALI 425
A Q + +L Q+LA Q+ Q+ ++ V + +QL QL+ S QQL
Sbjct: 210 ALQTSEGQLQQQLAQQKEEDQRLTEKEKQLNSSLAVKEKAEQLIQLKTQLAASDQQLP-- 267
Query: 426 DTALADSQHLAGLANAWHAYL-PQLKQVMLIGGRLTKGREELPGLQAQASQANARLQAER 484
A + Q L AY+ P L Q + L K R + + + ++ +
Sbjct: 268 --AFQEKQRLLQQYQKAQAYVKPLLDQFQELEIDLEKYRVSVADCERFKIRFEQEIEEKN 325
Query: 485 DAYDLLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQELRQQLDALRE 544
Y L+++ + + A DLL ++E+++L + L QQL L
Sbjct: 326 TRYQKLYKDYSNKGEKEARIRDLL------------QIKELNKLSSEKDSLAQQLQQLN- 372
Query: 545 RQQQAMLQRQQLITEGTAAKAELEAAEQALTLTRQLLERQRLARNTSVEELRNQLRDGEP 604
Q A +++ +T ++E AE+AL + + L + +E +LR E
Sbjct: 373 LQNSAQQEQKDKLTH------QIEDAEKAL----EQIAAPELDHVSKMEAALLELRQLED 422
Query: 605 CPVCGSAEHPFHQPEALLQSLGRHDQAEEHAAQKQVETLNSKLVELRTQLGVVNAQLKDF 664
S + L+ L + + A Q+ ++ + + + QL
Sbjct: 423 RSKLLSDQ---------LKGLSADIASTQKAQQQLLQEAAMEAPTFPSAIQTTTEQLHQV 473
Query: 665 QQQQQRLGEQ--LQPLVAQVQAHSLWPALAPQDDKA--RSAWLDSQLRRLDEEISQDEKR 720
Q+ ++ L +Q L Q++ P + A + + +L++ DE I + +R
Sbjct: 474 QKDREHLLQQQGLFTYAHQLKPGEACPLCGAMEHPAPLEHHFDEEKLQKTDEAIQRFSQR 533
Query: 721 QSALLALQRDAARLNQQLQAAHDAQQQAQRHLEQQHQALANDEQL---LQQGLNDLAGVL 777
L + Q +L+ ++ A + HLE+Q +A +QL +QQ L + G
Sbjct: 534 LETLRSTQSSYEKLHLNMENAEKS------HLEKQQEA----DQLQNRIQQLLKENGGAQ 583
Query: 778 PEEALKALNDDPANAFLALDQQIAQRLQQLEQRKDELEEQQARQTQLDKLRDQQQARVQG 837
+ +AL A L ++ + Q+L+ L L EQ+A T+ ++ ++ QA Q
Sbjct: 584 EADLAQALQT--AKDTLQREKNLQQQLKAL------LAEQKAFLTKAEQDLNRFQAAEQE 635
Query: 838 QQQLQQKLAALDEQRQQALASLAELLGEHASAEAWQQHMDTALEHARTLDADTAQRLQDL 897
+ LQ K+ + + A + +LL ++ SA A Q D + + L DL
Sbjct: 636 VKTLQTKI-----ETKLAEINYPDLLEKYRSASAAQIDEDIS---------KVKRYLDDL 681
Query: 898 RTQGVQLASELKANTQQQQALDAECQQLQAQIAQWRSEHPELDDAGLDRLLAMDD----A 953
+ L QQQ A + Q ++A+ +++ + D++ L LA D
Sbjct: 682 EVNLPRAQDALNEARQQQTTNLAHLKTYQERLAEVKTKLGKTDES-LSLALAQHDFTGIQ 740
Query: 954 QVNELRQR------LQGAEKAIEQGRVLLQEREQRLQHHAAQMTVD----TTVQALEQA- 1002
V +L ++ ++ KA ++ R L++++ Q L+ A T D T VQA QA
Sbjct: 741 TVKDLLEKSLDQTKMEEEIKAFDRQRALMRDKIQALEAEEAVATFDQEQFTAVQAAFQAA 800
Query: 1003 ---LAELRERLANHEQQCAELRAQQADDQRRQQAHQALAAEIEQAHQQWQRWARLNALIG 1059
L ++R+A +++ ++ A+ + R ++ Q++ R L L G
Sbjct: 801 KTALEATQKRVALLQKEIDDINAKLEEKARLKKDFQSVE----------NRETNLKELYG 850
Query: 1060 SASGDVFRKIAQGYNLDLLLHHANAQLRQLARRYRLKRGGSALGLLVLDTEMGDELRSVH 1119
G F K L L+ AN + QLA+ + V D G + R +
Sbjct: 851 LFQGSGFVKYVSNIYLKELVQTANIRFMQLAKNSLTLEVDDSNTFWVKDHLNGGKRRLLK 910
Query: 1120 SLSGGETFLVSLALALGLASMASSTLRIES--LFIDEGFGSLDPESLQLAMDALDGLQAQ 1177
+LSGG+TF SL LAL LA + R + F+DEGFG+LD +L+ + L L+ +
Sbjct: 911 TLSGGQTFQASLCLALALAEKVKALNRADQSFFFLDEGFGALDKNALRTVFETLKSLRHE 970
Query: 1178 GRKVAVISHVQEMHERIPVQIQV 1200
R V +ISHV+E+ + I V QV
Sbjct: 971 KRIVGIISHVEELQQEIGVYAQV 993
Score = 104 bits (260), Expect = 3e-26
Identities = 205/904 (22%), Positives = 356/904 (39%), Gaps = 130/904 (14%)
Query: 6 IRLKNLASLAGPIDIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGTVPRLNAIG 65
+ ++ L S IDFT L AGLF I G G+GKS++L+A+ LAL+GT RL + G
Sbjct: 6 LEIEGLYSYKAKQTIDFTH--LTGAGLFGIFGAVGSGKSSILEAILLALYGTTERLASKG 63
Query: 66 REAKVPDADGDIPTSDPRNLLRRGTGSGFAEVDFVGIDGRRYRARWEANRARDKANGKLQ 125
+ + NL G F E + Y+A + A R K ++
Sbjct: 64 EKNSMV------------NLQSPGIAIHF-EFQAGKNNETSYKASYIAKR-NTKNFDDVK 109
Query: 126 HSRQSFYDLDSEQVLGSGKNEYKQLVEARLGLNFEQFTRAVMLAQSEFGAFLKADDKDRS 185
+ +FY+ SE G + E +G+ + F + V++ Q +F F++ KDR+
Sbjct: 110 PATHTFYEKSSE-----GWLPLEAKGEELVGMKMDHFRQTVIIPQGKFREFIEQKPKDRA 164
Query: 186 ELLEKLTNTAIYTRLGQRAFSKAREAGEAHNALKERASHLLPMAAEARAELDQRLE-QAQ 244
E++++L G F L + LL + E + +L+ +LE A
Sbjct: 165 EMMKEL--------FGLERFD-----------LAGKTKQLLSIEKEKKIKLETQLEGLAA 205
Query: 245 QQFKADQAGERQLEQQRNWLNEQRQLQAQHTEASTTLQAAELDWQQLAEPRLDLARLERL 304
+A Q E QL+QQ E+ Q + + + A + +QL + + LA ++
Sbjct: 206 FTKEALQTSEGQLQQQLAQQKEEDQRLTEKEKQLNSSLAVKEKAEQLIQLKTQLAASDQQ 265
Query: 305 APQRHQFHRRQALSAQLAPVAAKIAEQQQQQAELQVRTRE--------------LEQALD 350
P F +Q L Q A + Q EL++ + EQ ++
Sbjct: 266 LP---AFQEKQRLLQQYQKAQAYVKPLLDQFQELEIDLEKYRVSVADCERFKIRFEQEIE 322
Query: 351 ---TARQALADRQAEHGENAPRLRQAFAAQDTLARLDQELAAQRSISQQAQQ-QVADGQQ 406
T Q L + GE R+R ++ L +L E + S++QQ QQ + + Q
Sbjct: 323 EKNTRYQKLYKDYSNKGEKEARIRDLLQIKE-LNKLSSE---KDSLAQQLQQLNLQNSAQ 378
Query: 407 QLQQLEDNQQRSVQQLALIDTALADSQHLAGLANAWHAYLPQLKQVMLIGGRLTKGREEL 466
Q Q+ + Q + AL A + H++ + A L +L+Q+ + R +L
Sbjct: 379 QEQKDKLTHQIEDAEKALEQIAAPELDHVSKM----EAALLELRQL--------EDRSKL 426
Query: 467 PGLQAQASQANARLQAERDAYDLLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVEEMS 526
L Q +A + + + A L +EA E I L +K + + +
Sbjct: 427 --LSDQLKGLSADIASTQKAQQQLLQEAAMEAPTFPSAIQTTTEQLHQVQKDREHLLQQQ 484
Query: 527 RLHGREQELR-----------QQLDALRERQQQAMLQRQ----QLITEGTAAKAELEAAE 571
L +L+ + L + LQ+ Q ++ +++
Sbjct: 485 GLFTYAHQLKPGEACPLCGAMEHPAPLEHHFDEEKLQKTDEAIQRFSQRLETLRSTQSSY 544
Query: 572 QALTLTRQLLERQRLARNTSVEELRNQLRDGEPCPVCGSAEHPFHQPEALLQSL--GRHD 629
+ L L + E+ L + ++L+N+++ E+ Q L Q+L +
Sbjct: 545 EKLHLNMENAEKSHLEKQQEADQLQNRIQQ-------LLKENGGAQEADLAQALQTAKDT 597
Query: 630 QAEEHAAQKQVETLNSKLVELRTQLGVVNAQLKDFQQQQQRLGEQLQPLVAQVQAHSLWP 689
E Q+Q++ L L E + L L FQ +Q + + LQ + A +P
Sbjct: 598 LQREKNLQQQLKAL---LAEQKAFLTKAEQDLNRFQAAEQEV-KTLQTKIETKLAEINYP 653
Query: 690 ALAPQDDKARSAWLDSQLRRLDEEISQDEKRQSALLALQRDAARLNQQLQAAHDAQQQAQ 749
L +K RSA ++DE+IS K + L L+ + R L A Q
Sbjct: 654 DLL---EKYRSA----SAAQIDEDIS---KVKRYLDDLEVNLPRAQDALNEARQQQTTNL 703
Query: 750 RHLEQQHQALA--------NDEQL-LQQGLNDLAGVLPEEAL--KALNDDPANAFL-ALD 797
HL+ + LA DE L L +D G+ + L K+L+ + A D
Sbjct: 704 AHLKTYQERLAEVKTKLGKTDESLSLALAQHDFTGIQTVKDLLEKSLDQTKMEEEIKAFD 763
Query: 798 QQIAQRLQQLEQRKDELEEQQARQTQLDKLRDQQQARVQGQQQLQQKLAALDEQRQQALA 857
+Q A +++ + E Q Q ++ QA + Q+++A L ++ A
Sbjct: 764 RQRALMRDKIQALEAEEAVATFDQEQFTAVQAAFQAAKTALEATQKRVALLQKEIDDINA 823
Query: 858 SLAE 861
L E
Sbjct: 824 KLEE 827