Pairwise Alignments

Query, 799 a.a., adhesin-associated MmpL efflux pump (from data) from Pseudomonas putida KT2440

Subject, 787 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 135/614 (21%), Positives = 228/614 (37%), Gaps = 121/614 (19%)

Query: 233 FAKKVGDLIDGLVMVAMFFGVALVITLVLLYWFTWCIRSTVAVLITTLVAVVWQLGLMHA 292
           F+ +  D I+     +     ALV  ++LL +     RS   + ++ L A    L  + A
Sbjct: 238 FSVQTRDRIEADATRSSIVATALVAGILLLVY-----RSLRVLALSLLPAATGTLAGIAA 292

Query: 293 VGFGLDPYSMLVPFLIFAIGISHGVQKINGIALQSSDADNAL---------TAARRTFRQ 343
           V  G               G  HG+    G+ L     D A+         + A RT R+
Sbjct: 293 VELGF--------------GTVHGITLGFGVTLLGESVDYAIYLFTQTQPGSPAHRTLRR 338

Query: 344 LFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISK 403
           ++   ++ +    VGF T+L      + +L + +  G+ V +     +LP  +       
Sbjct: 339 IWPTVLLGMATSVVGFGTMLFSSFSGLAQLGLFSLTGLVVALAVTRWVLPSLLP----DG 394

Query: 404 KAIERSKKDATCEHPFWRLLSNFASAKVAPVSVV----LALLAFAGGLWYSQNLK----I 455
            A ER  + A    P    L+  A A   P++      LA LA+ G   +S  L     +
Sbjct: 395 YATERPARLA----PVLTALTRGAPALRLPLAAATLLSLAWLAYQGPAIWSAELSSLSPV 450

Query: 456 GDLDQGAPE-LRPDSRYNQDNNFIISNYSTSSDVLVIMVKTPSEKCSVHSTMAPIDELMW 514
            + DQ   E LR D       + +++  +T  + L           +     AP+ E M 
Sbjct: 451 AEADQRLDEALRRDLGAPDAGHLLVTGAATVEEALA----------AAERLAAPL-EAMT 499

Query: 515 TMENTPGVQSAISLVTVSKQVIKGMNEGSLKWETLSRNPDILNNSIARA-DGLYNGDCSL 573
           +     G +S     T+  Q  +   + +L        PD L  S+  A  GL     + 
Sbjct: 500 SDRLIAGYESPAH--TLPSQAAQRARQAALP------TPDRLRASLTEALQGLPFRPDAF 551

Query: 574 APVLVFLNDHKAETLERVTAVA------KAFADS---HDKEGLQFLL-----------AA 613
           AP L   +  KA T+  +T  +      K   DS   H   G   +L           AA
Sbjct: 552 APFLA--DSEKARTMPLLTPASLDGTSLKLKVDSLLVHSGTGWTAMLPLRGVTDPKALAA 609

Query: 614 GNAGIEAATNEVI--------------KSAELTILILVYICVAVMCLITFRSFAATLCIV 659
             AG  AA    +              +   LT+ +L  + + ++  +  RS  + +  V
Sbjct: 610 RLAGDPAAQGATLLNLKEESDSLYRTYRQEALTLALLGAVAITLLLALALRSVRSLVAAV 669

Query: 660 LPLVLTSVLGNALMAYMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEA 719
           +PL    V+  AL+  +G  + +  L  + L VG+G +Y + ++ R E       P    
Sbjct: 670 MPLAAAVVVTMALVTALGQTLTIFHLVGLLLVVGVGSNYSL-LFERPE-------PSPAL 721

Query: 720 YYQTLRSTGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALA 779
             +T+ S    V+   LC  IG  T   S+I     +G+ +            +L  A A
Sbjct: 722 RERTVAS----VVIANLCTVIGFGTLALSSIPVLHGIGMTVAI--------GAFLCIAFA 769

Query: 780 RFLIKPEKMVGKEG 793
             L +P++    EG
Sbjct: 770 AVLGRPQQPAEPEG 783



 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 28/230 (12%)

Query: 561 ARADGLY-NGDCSLAPVLV------FLNDHKAETLERVTAVAKAFADSHDKEGLQFLLAA 613
           A  DG++ + D + A +LV      F  D + +TLE +     AF ++    G   L+  
Sbjct: 177 ASRDGVWVSADGARALLLVQTAAPGFDMDAQQKTLELIQG---AFDEARGAAGPARLVMT 233

Query: 614 GNAGIEAATNEVIKSAELTILILVYICVAVMCLITFRSFAATLCIVLPLVLTSVLGNALM 673
           G A     T + I++      I+    VA + L+ +RS       +LP   T  L     
Sbjct: 234 GPAVFSVQTRDRIEADATRSSIVATALVAGILLLVYRSLRVLALSLLP-AATGTLAGIAA 292

Query: 674 AYMGIGVKVATLPVVALGVGI-----GVDYGIYIYSRLESFLRAGLPLQEAYYQTLRSTG 728
             +G G    T+  + LG G+      VDY IY++++ +     G P     ++TLR   
Sbjct: 293 VELGFG----TVHGITLGFGVTLLGESVDYAIYLFTQTQ----PGSPA----HRTLRRIW 340

Query: 729 KAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPAL 778
             VL       +G  T +FS+    A +GL     L+  +    W+LP+L
Sbjct: 341 PTVLLGMATSVVGFGTMLFSSFSGLAQLGLFSLTGLVVALAVTRWVLPSL 390