Pairwise Alignments

Query, 346 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 338 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  106 bits (265), Expect = 8e-28
 Identities = 105/340 (30%), Positives = 154/340 (45%), Gaps = 28/340 (8%)

Query: 11  LSVGFVQPLSEALRELGHDPEPLLRRYGLDATRLSEAGARLSIPRYMHMGHAAIE----- 65
           +S  FV      L   G D  P+L + GL A  ++EA   +S  +Y  +  AA E     
Sbjct: 16  ISGTFVDDALGCLTVQGIDAGPVLAQAGL-ALPVTEA---VSAEQYGALWTAAAEALDDE 71

Query: 66  MSGEAALGLRMGRLSRLAHTGLAGVTAAQAPTLGEAARTLLRFEPLYAANYRGHSRFEED 125
             G AA  +R G  + L H  +       A TL +A R  LRF  +   +  G     + 
Sbjct: 72  FFGLAARPMRCGSFTLLCHALMG------AQTLEQALRRALRFLRVVLDDPSGELVVGDG 125

Query: 126 AQGAWL--RFYSISPYNDYNRFVVDSLLAGWLAQLAELAGTPVQAERLEIEFAAPSYAAR 183
                L  R  + S +     +++   +  WL       G  +   +++     P + A 
Sbjct: 126 LASVVLSDRGAARSAFAYRTYWIILHGITCWLV------GRRIPIRQVDFRCGPPEHGAD 179

Query: 184 YQPLCSTPVQFAADGNQLRLSRATLQLANPGH-CPSTWQHLLQLCEAELLQRTRV-RSLG 241
           Y+     PV+F A  ++L      L+L  P H      +  L+   A +L R R    L 
Sbjct: 180 YRLFFGAPVRFDAPESRLAFDATFLKL--PAHRSERALRDFLRGAPANILVRYRHDEGLA 237

Query: 242 ERITHLLGPLLNGGREPDLEEVALHLQLPSWTLRRKLAEEGTRFRDLLNETRRDLAETYI 301
            R+   L  L      P   E+A  L+LP+ TLRR+LAEEG  +RD+ ++ RR  AE  +
Sbjct: 238 ARVRARLREL-PASAWPSFVELARQLRLPASTLRRRLAEEGAAYRDIKDDLRRLRAEDLL 296

Query: 302 RDTALAFGEIAYLLGFASAEAFQRAFKRWTGLTPGEFRRS 341
           RDT    GEIA  LGF+   AF RAF++WT L+PG FRR+
Sbjct: 297 RDTDRPVGEIAAELGFSEPSAFHRAFRKWTDLSPGAFRRA 336