Pairwise Alignments

Query, 286 a.a., tRNA pseudouridine (38-40)synthase from Pseudomonas putida KT2440

Subject, 270 a.a., tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) from Variovorax sp. SCN45

 Score =  236 bits (602), Expect = 4e-67
 Identities = 122/254 (48%), Positives = 156/254 (61%), Gaps = 5/254 (1%)

Query: 20  RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 79
           R+ALG+ Y G  Y GWQ Q SG  +VQ  LE ALSK A +PI  +CAGRTDAGVH   QV
Sbjct: 2   RLALGIRYNGQAYEGWQSQRSG-RTVQDKLEAALSKFAAQPIGTLCAGRTDAGVHALMQV 60

Query: 80  VHFDTRAVRDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRP 139
           VHFDT   R+  +W  G N  LP DI+V W++P+P +FH R  A ARRY YV+   P+RP
Sbjct: 61  VHFDTTVEREPFSWMRGPNRFLPDDIAVQWAQPVPDEFHCRASALARRYLYVLSQSPVRP 120

Query: 140 AHLAEEVTWNHRPLDVDRMAEAAQYLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHGQ- 198
           +     V W+   LD D M  AA  L+G HDFS+FRAS CQA+SP+K +  + +TR G+ 
Sbjct: 121 SLDTGRVGWSMHALDGDAMRAAAALLVGRHDFSSFRASACQARSPVKDLRRIEITRVGEG 180

Query: 199 ---MIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGL 255
                  +  A AFLHHM+RN+ G L+ IG G+ PV W  +VLE R+R+    T    GL
Sbjct: 181 ERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDEPVEWISQVLEARSRKVAAPTFSADGL 240

Query: 256 YLVQVEYPEAFALP 269
           Y +   Y   + LP
Sbjct: 241 YFLGPLYDAKWGLP 254