Pairwise Alignments
Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440
Subject, 1256 a.a., hypothetical protein from Xanthobacter sp. DMC5
Score = 352 bits (904), Expect = e-101
Identities = 221/588 (37%), Positives = 328/588 (55%), Gaps = 28/588 (4%)
Query: 515 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYS 574
+V L DIT ++ E L+ + A F +S D + +T S VN F R+TGY+
Sbjct: 668 AVGLLADITSSKQTERHLRLA----AAVFANSHDGLVVTNLKS-EVSAVNPAFSRITGYA 722
Query: 575 TDEVIGHTVYEIGIWADDKQ-RSALLAELRERGRVHHREMLGRNKRGDILTVEVSVEPI- 632
+E++G + + D++ +L +EL G + E+ R K G+I ++++ +
Sbjct: 723 EEEILGQNMRLLHSGRHDREFYRSLWSELTTAG-IWQGEIWNRRKNGEIFLQQLNISTVY 781
Query: 633 -TLNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNL 691
+ +D++Q K+++ ++ +A++DPLT+LPNR LL L ++ R
Sbjct: 782 DDSGAAQNFVGAFQDITQAKHSEFELDRIAHYDPLTDLPNRTLLASLLDLAVS---RPGS 838
Query: 692 RGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGL 751
R A+LF+DLD FK +NDSLGH GD VL++ R++ + T+ R GGDEFV++L G+
Sbjct: 839 RCAVLFVDLDRFKTVNDSLGHMAGDAVLQMAAQRIQDELEAGATLGRHGGDEFVIILEGI 898
Query: 752 EGSREHVEEKVRELADTLRELLAEPMSLDGQ-RLQVTPSIGVALIPDHGTTPADLLKRAD 810
G E LA+ + + + P S+ G + + S+G++L P+ TPA LL+ AD
Sbjct: 899 SGP-----EDAATLANHVIQQMGRPFSMPGGGEIYLGASVGISLFPEDADTPASLLQHAD 953
Query: 811 IALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIV 870
AL AK GR + + + A R+ ME DLR ALAR E L+FQP V+ RI
Sbjct: 954 SALAEAKSHGRGGYAFYTQALTRGARVRMEMEADLRRALARDEFILNFQPVVNLATGRIT 1013
Query: 871 GAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDF 930
G E L+RW P G P++FI + EE+GLI +G+W+++ AC A L G AD
Sbjct: 1014 GTEALVRWQSPTHGLVTPNRFIPLAEETGLIEPLGNWVMEAACRQMAEWLDKG---ADLD 1070
Query: 931 NLCVNISPRQFRQN---DFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCEL 987
+ VN+SPRQF++ +FV VLR LP L +EITE ++ K+ +L
Sbjct: 1071 FIAVNLSPRQFQRGALCEFVDDVLRRTG---LPAHKLEVEITESLLFDARAAAERKLRQL 1127
Query: 988 KRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSL 1047
K GV A+DDFGTGYSSL YLKR P+ LKID+SFVRD P DAEI AI+++AR+L
Sbjct: 1128 KDTGVRIALDDFGTGYSSLAYLKRFPISKLKIDRSFVRDLP-RAADAEIATAIISIARAL 1186
Query: 1048 DLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQMLLEAP 1095
+V+AEG+E Q FL+ GC QG+L SR + ++ L P
Sbjct: 1187 GFSVVAEGIEDPRQHDFLKARGCDFGQGHLFSRAVTGERLLRLALSGP 1234
Score = 85.1 bits (209), Expect = 3e-20
Identities = 95/405 (23%), Positives = 165/405 (40%), Gaps = 25/405 (6%)
Query: 140 IREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQV 199
+R+ R+ A+ +E RF F + IL DG I N M G P S +
Sbjct: 416 MRDAARELSAARAVSEAEARFRAAFDQAATGILHLDL-DGTILRANDKACRMLGRPASAL 474
Query: 200 IGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVH-DGILCTQGIELEGV 258
G+ +L +P+ + R I E++ VH DG V
Sbjct: 475 TGERLWQLR---SPDHAAAGADVIRPLLDGRIAEIE--TEESLVHPDGSAVWLAFTFSLV 529
Query: 259 T-------FLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSAR 311
L+ D + R+ AE AL++S+ER LA+ + G WD ++ +G LY S R
Sbjct: 530 RNADGAADHLLLVAQDISARRAAEAALRESEERFGLAVKGSDQGVWDLNVRTGSLYLSQR 589
Query: 312 AAQLHGLPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSR 371
A ++ G+ P + + E + +R + A+++ G ++ R++ +G+
Sbjct: 590 AREMLGVGPDEAVDIRRPWHELLHPDDRRKVAPAWKAFLSGGVPTLELDIRLRRPDGSYH 649
Query: 372 YIESRARLYRDDQGIPLRMAGTLLDITD--QVEREQRLSASEEKFASLFQVSPDPICVTR 429
RD G R G L DIT Q ER RL+ A++F S D + VT
Sbjct: 650 DFRWNGLAARDAAGTISRAVGLLADITSSKQTERHLRLA------AAVFANSHDGLVVTN 703
Query: 430 QDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVV 489
+ + +NPAF++ G++ ++LG+ + E + + + + +
Sbjct: 704 LKS-EVSAVNPAFSRITGYAEEEILGQNMRLLHSGRHDREFYRSLWSELTTAGIWQGEIW 762
Query: 490 LNHRNGDPLTCVISSRLITVDDQPCS--VTTLRDITQQQRAEAAL 532
+NG+ ++ + D V +DITQ + +E L
Sbjct: 763 NRRKNGEIFLQQLNISTVYDDSGAAQNFVGAFQDITQAKHSEFEL 807
Score = 57.0 bits (136), Expect = 9e-12
Identities = 51/244 (20%), Positives = 106/244 (43%), Gaps = 8/244 (3%)
Query: 35 ALNGAHLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLLPEEDRARTRQVFQ 94
A+ G+ G W ++ +G + S+ + + G P + + +LL +DR + ++
Sbjct: 566 AVKGSDQGVWDLNVRTGSLYLSQRAREMLGVGPDEAVDIRRPWHELLHPDDRRKVAPAWK 625
Query: 95 AVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGR-PQMIGVIREITRQRERETAL 153
A ++G + R+R PDGS H NG D G + +G++ +IT ++ E L
Sbjct: 626 AFLSGGVPTLELDIRLRRPDGSYHDFRWNGLAARDAAGTISRAVGLLADITSSKQTERHL 685
Query: 154 INSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLWVNP 213
+ A +F S + +++T + + VN F + G+ +++G+ L +
Sbjct: 686 ----RLAAAVFANSHDGLVVTNLK-SEVSAVNPAFSRITGYAEEEILGQNMRLLHSGRHD 740
Query: 214 EQRHQIVESTRANGGPLIMEVQFRATSGKV--HDGILCTQGIELEGVTFLISTFVDTTER 271
+ ++ + S G E+ R +G++ + T + + F D T+
Sbjct: 741 REFYRSLWSELTTAGIWQGEIWNRRKNGEIFLQQLNISTVYDDSGAAQNFVGAFQDITQA 800
Query: 272 KRAE 275
K +E
Sbjct: 801 KHSE 804
Score = 45.4 bits (106), Expect = 3e-08
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 17/199 (8%)
Query: 92 VFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHG-RPQMIGVIREITRQRERE 150
V + +++G E + PDGS WL SL + G ++ V ++I+ +R E
Sbjct: 494 VIRPLLDGRIAEIETEESLVHPDGSAVWLAFTFSLVRNADGAADHLLLVAQDISARRAAE 553
Query: 151 TALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFG-WPGSQV-IGKTSLELG 208
AL SE+RF S + R G ++ ++Q +M G P V I + EL
Sbjct: 554 AALRESEERFGLAVKGSDQGVWDLNVRTGSLY-LSQRAREMLGVGPDEAVDIRRPWHEL- 611
Query: 209 LWVNPEQRHQIVESTRA--NGG--PLIMEVQFRATSGKVHDGILCTQGIELEGVTFLIST 264
++P+ R ++ + +A +GG L ++++ R G HD G+ IS
Sbjct: 612 --LHPDDRRKVAPAWKAFLSGGVPTLELDIRLRRPDGSYHD--FRWNGLAARDAAGTISR 667
Query: 265 FV----DTTERKRAEQALK 279
V D T K+ E+ L+
Sbjct: 668 AVGLLADITSSKQTERHLR 686
Score = 35.0 bits (79), Expect = 4e-05
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 6/165 (3%)
Query: 498 LTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHS 557
L C + + V + +RD ++ A A+ +E +F AF + I +
Sbjct: 395 LACALLLLAVAVGRGLLQKSRMRDAARELSAARAVSEAEARFRAAFDQAATGILHLDL-D 453
Query: 558 GRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAELRERGRVHHRE----M 613
G L ND CR+ G + G ++++ D A + GR+ E +
Sbjct: 454 GTILRANDKACRMLGRPASALTGERLWQLRS-PDHAAAGADVIRPLLDGRIAEIETEESL 512
Query: 614 LGRNKRGDILTVEVSVEPITLNEVDCLLLTARDVSQLKNAQAQIR 658
+ + L S+ D LLL A+D+S + A+A +R
Sbjct: 513 VHPDGSAVWLAFTFSLVRNADGAADHLLLVAQDISARRAAEAALR 557
Score = 32.7 bits (73), Expect = 2e-04
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 15/203 (7%)
Query: 385 GIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQ 444
G L + D ++ + +S +E +F + F + I D G + N +
Sbjct: 407 GRGLLQKSRMRDAARELSAARAVSEAEARFRAAFDQAATGILHLDLD-GTILRANDKACR 465
Query: 445 TFGWSSAQVLGRTAEEIGLWA-ESVERAKRIEQVIREQALSNVAVV-----LNHRNGDPL 498
G ++ + G LW S + A VIR +A + L H +G +
Sbjct: 466 MLGRPASALTGER-----LWQLRSPDHAAAGADVIRPLLDGRIAEIETEESLVHPDGSAV 520
Query: 499 TCVISSRLITVDDQPCSVTTL--RDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERH 556
+ L+ D L +DI+ ++ AEAAL+ SEE+F A S +
Sbjct: 521 WLAFTFSLVRNADGAADHLLLVAQDISARRAAEAALRESEERFGLAVKGSDQGVWDLNVR 580
Query: 557 SGRYLEVNDGFCRLTGYSTDEVI 579
+G L ++ + G DE +
Sbjct: 581 TGS-LYLSQRAREMLGVGPDEAV 602