Pairwise Alignments
Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440
Subject, 1247 a.a., diguanylate cyclase from Pseudomonas simiae WCS417
Score = 491 bits (1265), Expect = e-142
Identities = 277/692 (40%), Positives = 405/692 (58%), Gaps = 19/692 (2%)
Query: 396 DITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLG 455
DIT E +Q+L SEEKFA F SPD + ++RQ G IE+N F++ G++SA L
Sbjct: 545 DITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLIEVNDGFSRITGFTSATSLD 604
Query: 456 RTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITVDDQPCS 515
++ ++G+W + ER +E + R+ + + + +G C +SSR + + D C
Sbjct: 605 QSTLDLGIWVDLNERKHMLELMQRDGFVRDFICHIRRSDGQIRLCELSSRPLPIGDDDCM 664
Query: 516 VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYST 575
+T RDIT++Q + L+ + A F S+ + + IT+ VN F +TGYS
Sbjct: 665 LTIARDITERQLMQEKLQQA----ATVFESTAEGVLITDTRQN-ISAVNRAFSEITGYSE 719
Query: 576 DEVIGHTVYEIGIWADDKQ-RSALLAELRERGRVHHREMLGRNKRGDILTVEVSVEPITL 634
E +G+T + D +A+ +L +G E+ R K G++ +++ +
Sbjct: 720 AEALGNTPRLLASGLHDSAFYAAMWHQLTAQGH-WQGEISNRRKNGELYPSWLTISAVRN 778
Query: 635 NE--VDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLR 692
E + + D+S LK AQA++ + A+HDPLT LPNR L RL + + +
Sbjct: 779 REQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETGQQ 838
Query: 693 GALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLE 752
GA+LFLDLD FKHINDSLGHP+GD +LK I RL+ +R DTVARLGGDEF++LL GL+
Sbjct: 839 GAVLFLDLDRFKHINDSLGHPIGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 898
Query: 753 GSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIA 812
+ + + LA+ L P ++ SIG +L P+ GT A L+K AD A
Sbjct: 899 HASD-----AQYLANKLLACFTPPFQAGEHEFFISASIGTSLYPEDGTDVATLVKNADAA 953
Query: 813 LYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGA 872
+YR+K GRN + + + A+ER+ +E++LR A+ R EL+L++QP++ + ++GA
Sbjct: 954 MYRSKAKGRNRVESYTRDLTAQANERVALEHELRRAIERDELSLYYQPKLSLATHELIGA 1013
Query: 873 EVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFN- 931
E L+RWHHP G PP FI + EE+G+IL++G W+L++AC R + DDF
Sbjct: 1014 EALIRWHHPTFGDVPPEHFIALAEENGMILQIGDWVLEQAC----RQMHAWQGHFDDFGP 1069
Query: 932 LCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYG 991
L VN++ Q R +GR+ + L DY+L L LEITE ++ E+ + + +LK G
Sbjct: 1070 LSVNLAGAQLRHPGLLGRIKQLLHDYQLDPGRLQLEITENFIMSQAEEALDVLHQLKDLG 1129
Query: 992 VSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAV 1051
V A+DDFGTGYSSL+YLKRLP+D LKIDQSFVR P DP+DA IVRAI+A+ S+ +
Sbjct: 1130 VQLAIDDFGTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTI 1189
Query: 1052 IAEGVELTEQLAFLERLGCHLYQGYLHSRPLP 1083
IAEGVE Q AFL GC QGY+ S PLP
Sbjct: 1190 IAEGVENPAQQAFLAAEGCEQMQGYIVSLPLP 1221
Score = 177 bits (449), Expect = 4e-48
Identities = 113/396 (28%), Positives = 192/396 (48%), Gaps = 6/396 (1%)
Query: 267 DTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGML-YGSARAAQLHGLPPIPFHE 325
+ R EQ L+ S+ ++S W+ + Y S A +L G P H
Sbjct: 295 EIARRVALEQELRSSEYHYRGLVESLSAIAWEASVADFTYSYVSPHAEELLGYPRA--HW 352
Query: 326 SFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQG 385
F+ + + +AY ++ I YRV +G ++ L
Sbjct: 353 LIPGFWRNIIHPADLTRAEAYCYRETRANRDHSIDYRVITADGRCLWVRDIVSLIEHGHE 412
Query: 386 IPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQT 445
LR G ++DI++ E+ L SE+KFAS+FQ PD + + R G +E+N AF
Sbjct: 413 PVLR--GLMIDISEAKRTEEALQLSEQKFASVFQQCPDMLVIARLSDGCLLEVNKAFEDQ 470
Query: 446 FGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSR 505
G + V+G+TA E+ +W +++V + ++ N+ + NG T +IS+
Sbjct: 471 IGLKAEHVVGKTATELNIWGIQGVGPDLLQRV-QTTSIRNLEMPFLRSNGQAFTGLISAE 529
Query: 506 LITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVND 565
+D V +RDITQ + + L++SEEKFAKAFH+SPD + ++ + G +EVND
Sbjct: 530 PFQLDTIEAIVVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLIEVND 589
Query: 566 GFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGDILTV 625
GF R+TG+++ + + ++GIW D +R +L ++ G V R G I
Sbjct: 590 GFSRITGFTSATSLDQSTLDLGIWVDLNERKHMLELMQRDGFVRDFICHIRRSDGQIRLC 649
Query: 626 EVSVEPITLNEVDCLLLTARDVSQLKNAQAQIRHLA 661
E+S P+ + + DC+L ARD+++ + Q +++ A
Sbjct: 650 ELSSRPLPIGDDDCMLTIARDITERQLMQEKLQQAA 685
Score = 105 bits (262), Expect = 2e-26
Identities = 90/371 (24%), Positives = 172/371 (46%), Gaps = 43/371 (11%)
Query: 103 EQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQMIGVIREITRQRERETALINSEKRFAT 162
+ ++ +R+ DG W+ SL H P + G++ +I+ + E AL SE++FA+
Sbjct: 383 DHSIDYRVITADGRCLWVRDIVSLIEHGH-EPVLRGLMIDISEAKRTEEALQLSEQKFAS 441
Query: 163 LFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLW----VNPEQRHQ 218
+F P+ +++ R DG + EVN+ FED G V+GKT+ EL +W V P+ +
Sbjct: 442 VFQQCPDMLVIARLSDGCLLEVNKAFEDQIGLKAEHVVGKTATELNIWGIQGVGPDLLQR 501
Query: 219 IVESTRANGGPLIMEVQFRATSGKVHDGILCTQGIELEGVTFLISTFVDTTERKRAEQAL 278
+ ++ N +E+ F ++G+ G++ + +L+ + ++ D T+ K +Q L
Sbjct: 502 VQTTSIRN-----LEMPFLRSNGQAFTGLISAEPFQLDTIEAIVVVVRDITQLKETQQQL 556
Query: 279 KDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQL----HGLPPIPFHESFDAFFEG- 333
+ S+E+ A ++ P G+L R L G I S + +
Sbjct: 557 QTSEEKFAKAFHAS---------PDGLLLSRQRDGLLIEVNDGFSRITGFTSATSLDQST 607
Query: 334 ------VPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQGIP 387
V +ER M + + R+G ++ ++ +G R E +R +P
Sbjct: 608 LDLGIWVDLNERKHMLELMQ--RDGFVRDF--ICHIRRSDGQIRLCELSSR------PLP 657
Query: 388 LRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIE-INPAFTQTF 446
+ +L I + Q + ++ A++F+ + + + +T DT Q I +N AF++
Sbjct: 658 IGDDDCMLTIARDITERQLMQEKLQQAATVFESTAEGVLIT--DTRQNISAVNRAFSEIT 715
Query: 447 GWSSAQVLGRT 457
G+S A+ LG T
Sbjct: 716 GYSEAEALGNT 726