Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 637 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  359 bits (922), Expect = e-103
 Identities = 209/563 (37%), Positives = 321/563 (57%), Gaps = 20/563 (3%)

Query: 532  LKSSEEKFAKA---FHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGH--TVYEI 586
            LK + E+  +A   F  + + + +T+   G  + VN  F  +TGYS ++V+G   ++++ 
Sbjct: 76   LKENRERLRQAAAVFDCTREGVLVTDT-KGLIVHVNRAFMEITGYSREDVMGRQPSLFKS 134

Query: 587  GIWADDKQRSALLAELRERGRVHHREMLGRNKRGDILTVEVSVEPI--TLNEVDCLLLTA 644
            G  + +  +   + +  ER      E+  R K G+I     ++  I     +V   +   
Sbjct: 135  GRHSSNFYQQ--MFQSLERTGEWSGEIWNRRKSGEIYPQWQTIRVIHDDQGQVSHYVAVF 192

Query: 645  RDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFK 704
             D+S +K+++ ++ HLA+HDPLT+LPNR L  DR  Q +A  + H    ALL LDLDHFK
Sbjct: 193  SDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRAEQALASAQTHKRGCALLLLDLDHFK 252

Query: 705  HINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRE 764
             INDSLGH VGD +LK++  RL+A      T+ARLGGDEF VL        +        
Sbjct: 253  IINDSLGHNVGDQLLKLVGERLKALFGPGVTLARLGGDEFAVLAESCPQVAQ-----AAG 307

Query: 765  LADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTT 824
            LA  + + + +P   DG +L ++ SIG++L P    +   LL+ AD AL++AK +GR   
Sbjct: 308  LAQRMLDAMKQPFIFDGHQLFISASIGISLFPSDALSAEQLLRNADSALFKAKSAGREGY 367

Query: 825  QLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLG 884
             L+   +   A  R+ + ++LR AL + EL +++QP  D  D+R++G E L+RW HP+ G
Sbjct: 368  ALYTEELTAHAQNRVEIASELRRALEQQELCVYYQPVHDLNDSRLIGVEALVRWQHPERG 427

Query: 885  QQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFN-LCVNISPRQFRQ 943
              PP +FI + E +GLI ++ +W++++AC    R + D L      + + +N+S R F +
Sbjct: 428  LVPPGEFIPIAERTGLIADIDAWVMNQAC----RQMCDWLAQGTPLSFIAINVSSRLFAR 483

Query: 944  NDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGY 1003
             +   +V + L D  L    L LE+TE  V+++ E  + ++  L+  G+  A+DDFGTGY
Sbjct: 484  RELYEQVAQVLHDTGLDPAFLELEVTESAVMEDPEVALEQLHRLRELGLRLAIDDFGTGY 543

Query: 1004 SSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLA 1063
            SSL  LKRLPV  LKIDQ FV   P D +DA IVR ++A+A+S+ + V AEG+E  EQ  
Sbjct: 544  SSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVVIALAKSMGMQVHAEGIEQREQAR 603

Query: 1064 FLERLGCHLYQGYLHSRPLPLPE 1086
            FL    C L QGY   RP+P  E
Sbjct: 604  FLLDQQCDLGQGYWFGRPVPAGE 626



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 15/150 (10%)

Query: 404 EQRLSASEEKF---ASLFQVSPDPICVTRQDT-GQFIEINPAFTQTFGWSSAQVLGRTAE 459
           +Q L  + E+    A++F  + + + VT  DT G  + +N AF +  G+S   V+GR   
Sbjct: 73  QQPLKENRERLRQAAAVFDCTREGVLVT--DTKGLIVHVNRAFMEITGYSREDVMGRQPS 130

Query: 460 EIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITVDDQPCS--VT 517
                  S    +++ Q +      +  +    ++G+      + R+I  D    S  V 
Sbjct: 131 LFKSGRHSSNFYQQMFQSLERTGEWSGEIWNRRKSGEIYPQWQTIRVIHDDQGQVSHYVA 190

Query: 518 TLRDITQQQRAEAALKSSEEKFAKAFHSSP 547
              DI       +A+K SE + A   H  P
Sbjct: 191 VFSDI-------SAIKDSEHELAHLAHHDP 213



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 118 HWLEINGSLTHDPHGRPQMIGVIREITRQRERETALINSEKRF---ATLFHLSPNAILLT 174
           HWL++ G +          + +     R  + +  L  + +R    A +F  +   +L+T
Sbjct: 42  HWLQVRGYVWVTLSALAIYL-ICARFARANQLQQPLKENRERLRQAAAVFDCTREGVLVT 100

Query: 175 RRRDGMIFEVNQHFEDMFGWPGSQVIGK 202
             + G+I  VN+ F ++ G+    V+G+
Sbjct: 101 DTK-GLIVHVNRAFMEITGYSREDVMGR 127