Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  421 bits (1081), Expect = e-121
 Identities = 299/896 (33%), Positives = 457/896 (51%), Gaps = 39/896 (4%)

Query: 218  QIVESTRANGGPLIMEVQFRATSG-KVHDGILCTQGIELEGVTFLISTFVDTTERKRAEQ 276
            Q++++       L +EV+     G ++H  ++    ++      +I +  D T RK+ E 
Sbjct: 381  QLIDALIEQRPLLELEVRLPTPQGTELHLWLMARLPLQRRDYQAVILSISDITSRKQVEL 440

Query: 277  ALKDSQERLDLALDSAQLGTWDWHIPSG-MLYGSARAAQLHGLPPIPFHESFDAFFEGVP 335
            +L + +      + +     +   +PS  M++ +    Q  G       +  D F+E + 
Sbjct: 441  SLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDRTELAQMGDRFWELLL 500

Query: 336  EHERNSMRQAYRSLREGPAGNYQI--TYRVQLENGTSRYIESRAR-LYRDDQGIPLRMAG 392
              E  +  QA R  +     +  +    R +  +G+ R  + R + L R+ +G+  R+ G
Sbjct: 501  HPEDAAHYQALRRQQRDNCHDQPLHCQLRFRHRDGSWRCYDIREQVLTRNAEGLVTRIIG 560

Query: 393  TLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSS-- 450
               D+T Q+E  Q L  SE+++  L +   D I  T     +   ++P+     G+ +  
Sbjct: 561  VGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQL-KLNYVSPSVQSVLGYQADW 619

Query: 451  ------AQVLGRTAEEIGLWA--ESVERAKRIEQVIRE--QALSNVAVVLNHRNGDPLTC 500
                    ++   A+  G+++  E V +A      + +    L     + +    D    
Sbjct: 620  IFANGWQSIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKI 679

Query: 501  VISSRLITV--DDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERH 556
             I  RL+ V  DDQ     +   RDI+QQ+RAE  L+ +    A  F  S  AI IT+  
Sbjct: 680  PIELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRMA----ATVFEHSTSAILITDP- 734

Query: 557  SGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSAL---LAELRERGRVHHREM 613
            +G  ++ N+ F R++GY+  EV+      + +  D++Q   L   + +L +RG       
Sbjct: 735  AGYIVQANEAFSRVSGYAVSEVLDQLPGMLTV--DEQQEGHLRYVVKQLHQRGSWEGEVW 792

Query: 614  LGRNKRGDILTVEVSVEPITLNEVDCLLLTA--RDVSQLKNAQAQIRHLAYHDPLTNLPN 671
            L R + GD     V +  +  +E D         D+S+ K ++ +I  LAY+D LT+LPN
Sbjct: 793  LKR-RDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPN 851

Query: 672  RALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVR 731
            R L  DRL   +   +R      L+FLDLD FK INDSLGH  GD +LK +  RL A V 
Sbjct: 852  RTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMALRLLACVD 911

Query: 732  LEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIG 791
             +DTVAR+GGDEF +LL     +RE    +   +A+ +   L  P  L+ +   VT SIG
Sbjct: 912  DDDTVARMGGDEFTLLLQP-RPTREMALNRAIHVAENILGSLVRPFVLENREFFVTASIG 970

Query: 792  VALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALAR 851
            +AL P  G+  + L+K AD A+Y AK+ G+N  Q +   M  +A ERL +E+DLR A+ +
Sbjct: 971  IALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLELESDLRHAMEQ 1030

Query: 852  GELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDE 911
             E  L++QPQ      R+ GAE LLRW HP  G  PP  FI V+EE GL+++VG W+L E
Sbjct: 1031 NEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLRE 1090

Query: 912  ACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEG 971
            A     ++            + VNIS RQF       R+   L++  LP   L LE+TE 
Sbjct: 1091 AS---RQLKAWHKAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLPPACLELELTES 1147

Query: 972  IVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDP 1031
            I+++ + + +  +  LK  G+S A+DDFGTGYSSL YLK+ P+D LKID++FV   P   
Sbjct: 1148 ILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGE 1207

Query: 1032 NDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEF 1087
             DA+I RAI+AMA SL+LAVIAEGVE  EQL FL   GC   QGYL  RP+P  +F
Sbjct: 1208 QDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQF 1263



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 91/472 (19%), Positives = 190/472 (40%), Gaps = 51/472 (10%)

Query: 91  QVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQMIGVIREITRQRERE 150
           Q+  A++   P+ + +  R+  P G+   L +   L         +I  I +IT +++ E
Sbjct: 381 QLIDALIEQRPLLE-LEVRLPTPQGTELHLWLMARLPLQRRDYQAVILSISDITSRKQVE 439

Query: 151 TALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQV--IGKTSLELG 208
            +L+  E  ++ +    P+ + +       +   N+H     G+  +++  +G    EL 
Sbjct: 440 LSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDRTELAQMGDRFWELL 499

Query: 209 LWVNPEQRHQIV---ESTRANGGPLIMEVQFRATSGK-----VHDGILCTQGIELEGVTF 260
           L       +Q +   +    +  PL  +++FR   G      + + +L      L  VT 
Sbjct: 500 LHPEDAAHYQALRRQQRDNCHDQPLHCQLRFRHRDGSWRCYDIREQVLTRNAEGL--VTR 557

Query: 261 LISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLPP 320
           +I    D T +  A Q+L+DS++R  +  +S           S +++ +    +L+ + P
Sbjct: 558 IIGVGKDVTVQIEASQSLRDSEQRYRMLAESI----------SDVIFSTDNQLKLNYVSP 607

Query: 321 ----IPFHESFDAFFEGVPEHERN--------SMRQAYRSLREGPAGNYQITYRVQLE-- 366
               +  +++   F  G      N        S+ +        PA   Q+  ++  +  
Sbjct: 608 SVQSVLGYQADWIFANGWQSIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLF 667

Query: 367 -------NGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQ 419
                  +G    IE R  L  DD      + G   DI+ Q   E+ L  +    A++F+
Sbjct: 668 LFDCLRADGRKIPIELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRMA----ATVFE 723

Query: 420 VSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIR 479
            S   I +T    G  ++ N AF++  G++ ++VL +    + +  +     + + + + 
Sbjct: 724 HSTSAILIT-DPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLH 782

Query: 480 EQALSNVAVVLNHRNGD--PLTCVISSRLITVDDQPCSVTTLRDITQQQRAE 529
           ++      V L  R+GD  P    I++ L    D    V    DI++++ +E
Sbjct: 783 QRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASE 834