Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  474 bits (1219), Expect = e-137
 Identities = 320/964 (33%), Positives = 489/964 (50%), Gaps = 41/964 (4%)

Query: 142  EITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIG 201
            EI+R+   E  L +SE  +  L              D     V+ H ED+ G+P S    
Sbjct: 295  EISRRIALEQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLGYPLSDW-- 352

Query: 202  KTSLELGLW---VNPEQR---HQIVESTRANGGPLIMEVQFRATSGKVHDGILCTQGIEL 255
               L  G W   ++PE         +S  A G    ++ +     G+          IE 
Sbjct: 353  ---LRPGFWRSILHPEDALWAQAYCDSETAAGRDHSLDYRVIRADGQPLWVRNIVSMIEH 409

Query: 256  EGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSA-QLGTWDWHIPSGMLYGSARAAQ 314
                 +    +D +E KR E AL+ S+++          +     H    +L  +    +
Sbjct: 410  GHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEE 469

Query: 315  LHGLPP--IPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRY 372
              GLPP  +    + D    GV      S       L +G   N ++++R    NG    
Sbjct: 470  QIGLPPDQVIGRTATDLDLWGV----EGSGPLLLERLHQGGIRNLEMSFR--RSNGQLFT 523

Query: 373  IESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDT 432
              + A  +  D G P  +   + DI+   E +Q+L  SEEKFA  F  SPD + ++RQ  
Sbjct: 524  GLTSAETFELD-GTPALVVA-VRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581

Query: 433  GQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNH 492
            G  +E+N  F +  G+     + +T+ ++G+W +  ER + ++Q+ R+  + +    +  
Sbjct: 582  GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNRDGFVRDFTCHIRR 641

Query: 493  RNGDPLTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITI 552
             +G    C +S+R + +    C +T  RDIT++   +  L+ +    A  F ++ + + I
Sbjct: 642  SDGQIRLCELSARPLPITGVDCMLTIARDITERHLMQEKLQLA----ATVFENTAEGVLI 697

Query: 553  TERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQ-RSALLAELRERGRVHHR 611
            T+    R   VN  F  +TGYS  E +G T   +     D     A+  +L   G     
Sbjct: 698  TDIDQ-RISAVNRAFSEITGYSEIEALGQTPRLLASGQHDSAFYLAMWHQLTAEGH-WQG 755

Query: 612  EMLGRNKRGDILTVEVSVEPITLN--EVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNL 669
            E+  + K G++    +++  +  +  E+   +    D+S +K+AQA++ + A+HDPLT L
Sbjct: 756  EIYNKRKNGELYPSWLTISAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGL 815

Query: 670  PNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEAS 729
            PNR L  +RL   +   +  N +GA+LFLDLD FKHINDSLGHPVGD +LK I  RL+  
Sbjct: 816  PNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQ 875

Query: 730  VRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPS 789
            VR  DTVARLGGDEF++LL GL     H       +A+ L      P          + S
Sbjct: 876  VRDVDTVARLGGDEFIILLPGL-----HKPSDASTIANKLLACFNAPFQAGEHEFFTSAS 930

Query: 790  IGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLAL 849
            IG++L P  GT  + L++ AD A+YR+K  GRN  + +   +   ASER+ +E++LR A+
Sbjct: 931  IGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAV 990

Query: 850  ARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWIL 909
             R E++L FQP++  +   +VGAE L+RW HP  G+ PP  FI + EE+G IL++G W+L
Sbjct: 991  ERNEMSLCFQPKLSLKTQSLVGAEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVL 1050

Query: 910  DEACDACARMLTDGLIDADDFN-LCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEI 968
            ++AC    R +         F  L +N++  Q R      R+ + L  ++L    L LEI
Sbjct: 1051 EQAC----RQMQAWKQHYQPFGPLSINLAGAQLRHPHLARRIEQLLKHHQLKAGDLQLEI 1106

Query: 969  TEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAP 1028
            TE  ++   E+ ++ + +LK+ GV  A+DDFGTGYSSL+YLKRLP+D LKID+SF+R  P
Sbjct: 1107 TENFIMSQAEEALAVLYQLKKLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLP 1166

Query: 1029 VDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFR 1088
             DP+DA I RAI+A+ RS+ L +IAEGVE   Q  FL   GC   QGY+ S PLP  EF 
Sbjct: 1167 DDPHDAAIARAIIALGRSMQLTIIAEGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFA 1226

Query: 1089 QMLL 1092
               L
Sbjct: 1227 AAFL 1230



 Score =  111 bits (277), Expect = 4e-28
 Identities = 91/359 (25%), Positives = 167/359 (46%), Gaps = 19/359 (5%)

Query: 103 EQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQMIGVIREITRQRERETALINSEKRFAT 162
           + ++ +R+   DG   W+    S+    H +P M G++ +I+  +  E AL  SE++FA+
Sbjct: 383 DHSLDYRVIRADGQPLWVRNIVSMIEHGH-QPVMRGLMIDISETKRTEDALRLSEQKFAS 441

Query: 163 LFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLWVNPEQRHQIVES 222
           +F   P+ +L+ R  DG + EVN+ FE+  G P  QVIG+T+ +L LW   E    ++  
Sbjct: 442 VFQQCPDILLIARHSDGCLLEVNEAFEEQIGLPPDQVIGRTATDLDLW-GVEGSGPLLLE 500

Query: 223 TRANGGPLIMEVQFRATSGKVHDGILCTQGIELEGVTFLISTFVDTTERKRAEQALKDSQ 282
               GG   +E+ FR ++G++  G+   +  EL+G   L+    D ++ K  +Q L+ S+
Sbjct: 501 RLHQGGIRNLEMSFRRSNGQLFTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSE 560

Query: 283 ERLDLALDSAQLGTWDWHIPSGMLY----GSARAAQLHGLPPIPFHESFDAFFEGVPEHE 338
           E+   A  ++  G        G+L     G  R    + L P     S D    G+    
Sbjct: 561 EKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRLTG-YDLNPTIDQTSLDL---GIWVDL 616

Query: 339 RNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDIT 398
               R   +  R+G   ++  T  ++  +G  R  E  AR       +P+     +L I 
Sbjct: 617 NERKRLVDQLNRDGFVRDF--TCHIRRSDGQIRLCELSAR------PLPITGVDCMLTIA 668

Query: 399 DQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRT 457
             +     +    +  A++F+ + + + +T  D  +   +N AF++  G+S  + LG+T
Sbjct: 669 RDITERHLMQEKLQLAATVFENTAEGVLITDIDQ-RISAVNRAFSEITGYSEIEALGQT 726