Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  361 bits (927), Expect = e-104
 Identities = 219/552 (39%), Positives = 310/552 (56%), Gaps = 13/552 (2%)

Query: 540  AKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQ-RSAL 598
            A  F S+ + + +T+R  G  + VN  F R+TGY  DEVIG    +             +
Sbjct: 88   AAVFDSTLEGVLVTDRQ-GLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHGLAFYQEV 146

Query: 599  LAELRERGRVHHREMLGRNKRGDILTVEVSVEPITLNEVDCLLLTA--RDVSQLKNAQAQ 656
             A L E+G     E+  R K G+I     ++  I  +E +     A   D+S +K+++ +
Sbjct: 147  FATLAEKGE-WSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISAIKHSEQE 205

Query: 657  IRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGD 716
            + +LA+HDPLT LPNR L  DRL Q +A  + +    ALL LDLDHF+ IND LGH +GD
Sbjct: 206  LAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDGLGHTIGD 265

Query: 717  TVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEP 776
             +LK++  RL   +    T+ARLGGDEF VL+   +   +       +LA  + E + EP
Sbjct: 266  QLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQ-----AGKLAQCIIERMREP 320

Query: 777  MSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAAS 836
               DG RL ++ S+G++L P        LL+ AD ALY+AK +GR    L+   +   A 
Sbjct: 321  FQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAHAQ 380

Query: 837  ERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLE 896
             R+    +LR AL + EL ++FQP  D    R VG E L+RW HP+ G  PP +FI + E
Sbjct: 381  HRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPIAE 440

Query: 897  ESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDD 956
             +GLI E+ +W+L +AC    +    G   A    + VNIS R F Q++   +V   L D
Sbjct: 441  RTGLIAEIDTWVLRQACRQMVQWQAQGRQLAF---VGVNISSRLFGQHELYRQVAEVLHD 497

Query: 957  YRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDA 1016
              L   +L LE+TE  V+++ E  + ++  L+  GV+ A+DDFGTGYSSL  LKRLPV  
Sbjct: 498  TGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQK 557

Query: 1017 LKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGY 1076
            LKIDQ FV   PVD +D  IVR I+A+ARS+ + V AEG+E  EQ +FL +  C L QGY
Sbjct: 558  LKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGY 617

Query: 1077 LHSRPLPLPEFR 1088
               RP+P  + R
Sbjct: 618  WFGRPVPAEDLR 629



 Score = 33.5 bits (75), Expect = 5e-05
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 161 ATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLWVNPEQRHQIV 220
           A +F  +   +L+T R+ G+I  VN+ F  + G+   +VIG+   +     +    +Q V
Sbjct: 88  AAVFDSTLEGVLVTDRQ-GLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHGLAFYQEV 146

Query: 221 ESTRANGGPLIMEVQFRATSGKVHD--GILCTQGIELEGVTFLISTFVDTTERKRAEQAL 278
            +T A  G    E+  R  SG+++     +C    +   ++  ++ F D +  K +EQ L
Sbjct: 147 FATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISAIKHSEQEL 206