Pairwise Alignments

Query, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

Subject, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

 Score =  110 bits (275), Expect = 5e-29
 Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 27/283 (9%)

Query: 22  GQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRV-KPEYKIQAGDIVRVPPVRLPERD 80
           GQR+D  L   +    ++ + +++  G V +    V K    ++AG   R+     P+  
Sbjct: 36  GQRLDRALAALVPEFSRSYLQQLIEAGAVELQGRTVTKVSAGVKAGQAGRIELRPTPQSQ 95

Query: 81  EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFG-VIEALRQLRPDAKEL 139
              P      + ++   VYED+ L +++KPAG+ VH   G   G ++  L  L P A  L
Sbjct: 96  AFRP------ETMDLVTVYEDEHLRIVDKPAGLVVHPAPGHWSGTLLNGLLALDPKAALL 149

Query: 140 E---LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWP---TSKKQV 193
               +VHRLDRDTSGL+++A+ R+ +  + A +    V ++Y+A+  GH P    + +QV
Sbjct: 150 PRAGIVHRLDRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAI--GHKPWVGAAARQV 207

Query: 194 NAPLLKSNLRSGERMVEVNEE---GKEALTLFRVLRRFGDFATIVEARPITGRTHQIRVH 250
           +AP+ + + R+  RM  V+ E   GK A TL   L    +   +V     TGRTHQIRVH
Sbjct: 208 DAPIGR-DPRNRLRMAVVDLERHAGKTARTLIERLDSHSE-GCVVRCTLETGRTHQIRVH 265

Query: 251 TLHAGHMIAGDSKYGDEDFSREIRELGGKRLFLHAYALTVPLP 293
               GH + GD+ YG          +G  R  LHA+ L    P
Sbjct: 266 MASIGHPLVGDALYGGAP------AVGLSRQALHAFRLAFVHP 302