Pairwise Alignments

Query, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

Subject, 370 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Variovorax sp. SCN45

 Score =  274 bits (701), Expect = 2e-78
 Identities = 156/311 (50%), Positives = 201/311 (64%), Gaps = 27/311 (8%)

Query: 7   PTSGVQLIEVAPELAGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAG 66
           P + ++ + V  E AGQR+DNFL   LKGVPKT VYRI+R GEVR+NKGRV+ E +I+AG
Sbjct: 33  PNAAIKFLTVDAESAGQRLDNFLFRHLKGVPKTHVYRIIRSGEVRINKGRVQAETRIEAG 92

Query: 67  DIVRVPPVRLPERDE-----PAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGL 121
           D++R+PP+R+  R E     PAP         E  ++ ED A++ ++KPAG+AVHGGSG+
Sbjct: 93  DVLRLPPIRISARAEDGATPPAPAR-------EFPVLLEDDAVLAIDKPAGVAVHGGSGV 145

Query: 122 SFGVIEALRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMAL 181
           SFGVIE LR  RP AK LELVHRLDR+TSG+L++AKKRS L  L    R     K Y+AL
Sbjct: 146 SFGVIEQLRTARPGAKFLELVHRLDRETSGILLVAKKRSALVALQDQFRERETGKTYLAL 205

Query: 182 VRGHWPTSKKQVNAPLLK------SNLRSGERMVEV----NEEGKEALTLFRVLRRF--- 228
           V G WP +KK ++APL K      S   +GER V V    + +   A+TL RVL R    
Sbjct: 206 VEGAWPANKKVLDAPLAKYLLPDGSGAGAGERRVRVVAKDHPDAMRAVTLVRVLARLTLP 265

Query: 229 GDFA--TIVEARPITGRTHQIRVHTLHAGHMIAGDSKYGDEDFSREIRELGGKRLFLHAY 286
           GD    +++     TGRTHQIRVH   AGH IAGD KYG+ D  R ++++G KR+FLHA+
Sbjct: 266 GDATPMSLLAVTIKTGRTHQIRVHLASAGHPIAGDDKYGESDRQRALQKIGLKRMFLHAW 325

Query: 287 ALTVPLPDGGE 297
            L    P  GE
Sbjct: 326 RLQFNHPASGE 336