Pairwise Alignments

Query, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

Subject, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  112 bits (279), Expect = 2e-29
 Identities = 98/318 (30%), Positives = 151/318 (47%), Gaps = 30/318 (9%)

Query: 16  VAPELAGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRV--KPEYKIQAGDIVRVPP 73
           V+    GQR+D  L        ++ +   +    V VN G++  KP+ K+  G+ V +  
Sbjct: 11  VSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVN-GQLCDKPKEKVLGGERVAIDA 69

Query: 74  VRLPERDEPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFG-VIEALRQL 132
               E DE         Q +   IVYED  ++V+NKP  + VH G+G   G V+ AL   
Sbjct: 70  ----EIDEEIRFEA---QDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHY 122

Query: 133 RP---DAKELELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTS 189
            P   D     +VHRLD+DT+GL+++AK       L  +L+   + + Y A+  GH  T+
Sbjct: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHM-TA 181

Query: 190 KKQVNAPLLKSNLRSGERMVEVNEEGKEALTLFRVLRRFGDFATIVEARPITGRTHQIRV 249
              VN P+ +   +     + V+  GK A+T +R++  F    T +  R  TGRTHQIRV
Sbjct: 182 GGTVNEPISRHPTKRTH--MSVHPMGKPAVTHYRIMEHFR-VHTRLRLRLETGRTHQIRV 238

Query: 250 HTLHAGHMIAGDSKYG---------DEDFSREIRELGGKRLFLHAYALTVPLPDGG-ELK 299
           H  H  H + GD  YG          E+F   +R+    R  LHA  L +  P  G E++
Sbjct: 239 HMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKF--DRQALHATMLRLYHPVSGIEME 296

Query: 300 LEAPVDEVWAKTVERLSA 317
             AP+ +     ++ + A
Sbjct: 297 WHAPIPQDMVDLIDAMRA 314